Browse Element(s) Details


Os.7295.1.S1_at

Description gb:AK058912.1
DB_XREF= gi:32968930
TID=Os.7295.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7295 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023130P09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-008-H01, full insert sequence.
FL= gb:AK100893.1 gb:AK058912.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0741010/11Glycine cleavage system H protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07370Os.49936.2.A1_at3/112+3803012..3806536retrotransposon protein, putative, unclassified
LOC_Os02g07370Os.52238.1.S1_at2/112+3803012..3806536retrotransposon protein, putative, unclassified
LOC_Os02g07370Os.33601.3.S1_x_at1/112+3803012..3806536retrotransposon protein, putative, unclassified
LOC_Os02g07370OsAffx.15708.1.S1_at1/112+3803012..3806536retrotransposon protein, putative, unclassified
LOC_Os02g07380NANA2+3811254..3817625retrotransposon protein, putative, unclassified
LOC_Os02g07390NANA2+3820396..3820992hypothetical protein
LOC_Os02g07400NANA2+3821687..3824174retrotransposon protein, putative, unclassified
LOC_Os02g07410Os.7295.1.S1_at10/112+3827833..3830155Glycine cleavage system H protein, mitochondrial precursor, putative, expressed
LOC_Os02g07420Os.55262.1.S1_at11/112+3830522..3832332expressed protein
LOC_Os02g07420Os.55262.1.S1_x_at11/112+3830522..3832332expressed protein
LOC_Os02g07430Os.56165.1.S1_at11/112+3833127..3837132MADS-box protein ZMM17, putative, expressed
LOC_Os02g07440OsAffx.2537.1.S1_at11/112+3843535..3843984hypothetical protein
LOC_Os02g07450Os.10876.1.S1_at11/112+3846200..3850113Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os02g07460NANA2+3853274..3853732expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006546biological_processglycine catabolism
GO:0009853biological_processphotorespiration
GO:0019464biological_processglycine decarboxylation via glycine cleavage system
GO:0005739cellular_componentmitochondrion
GO:0005960cellular_componentglycine cleavage complex
GO:0004375molecular_functionglycine dehydrogenase (decarboxylating) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7295.1.S1_at--540--1251Chr02:3829484..3829508 (25 bp)
AGTTGGCAGCAGTGTATCCCAGGGA
LOC_Os02g07410
Os.7295.1.S1_at--721--2931Chr02:3829536..3829560 (25 bp)
AAGGCAACCAGCGATATCTACTCTC
LOC_Os02g07410
Os.7295.1.S1_at--264--2351Chr02:3829851..3829875 (25 bp)
AAAGAATGCGCCTTGACCCTTTTGT
LOC_Os02g07410
Os.7295.1.S1_at--751--4871Chr02:3829891..3829915 (25 bp)
GCTATCGAGCACTTATCTTTACCAC
LOC_Os02g07410
Os.7295.1.S1_at--198--5591Chr02:3829927..3829951 (25 bp)
GAAATCAGCACCGATCAACACATGA
LOC_Os02g07410
Os.7295.1.S1_at--777--151Chr02:3829956..3829980 (25 bp)
ATTAGTGTTGGCATTGCCTCTTCCA
LOC_Os02g07410
Os.7295.1.S1_at--977--6031Chr02:3829985..3830009 (25 bp)
GAGTTGCAAACTTCGAACCTGTAAA
LOC_Os02g07410
Os.7295.1.S1_at--173--6951Chr02:3830034..3830058 (25 bp)
GTAGTATCGCGTGATTTCATCTTCA
LOC_Os02g07410
Os.7295.1.S1_at--1133--431Chr02:3830052..3830076 (25 bp)
ATCTTCAATTGTAGCTCTGCCGCCT
LOC_Os02g07410
Os.7295.1.S1_at--675--4451Chr02:3830073..3830097 (25 bp)
GCCTCTGCTCCGTTTATTTCTGAAA
LOC_Os02g07410
Os.7295.1.S1_at--810--10551NONE
TTCTTGGTGTTTACGAGCCTGCATT
NONE
Target Sequence 
AGTTGGCAGCAGTGTATCCCAGGGAAAGAACTTTGGTGCTGTTGAAAGTGTGAAGGCAACCAGCGATATCTACTCTCCAG
TATCTGGAGAGGTGGTTGCAGTGAACGATGGACTAGGCGATGAACCTGGATTGGTTAATACAAGTCCATACGAGAGTGGG
TGGATCATCAAGGTCAAGGTTAGTGATTCAGGTGAGCTCAATTCANTGATGGATGACGCGAAATACTCGAAATTCTGCGA
GGAAGAAGATAGCAAGCATTGAACAAATACCAGTGACTTGTGATCTGCAAAGAATGCGCCTTGACCCTTTTGTCAATGCT
TGTGATGTGCTATCGAGCACTTATCTTTACCACCGGCTGCTCCTGAAATCAGCACCGATCAACACATGAATAAATTAGTG
TTGGCATTGCCTCTTCCACAAAGAGTTGCAAACTTCGAACCTGTAAATGACATGAGTTTCGTTATTTCTTTGTAGTATCG
CGTGATTTCATCTTCAATTGTAGCTCTGCCGCCTCTGCTCCGTTTATTTCTGAAACGTGTGCTTCGTTTACTTNTGAATC
GTGTGTTCTTGGTGTTTACGAGCCTGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7295.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis