Browse Element(s) Details


Os.7307.3.S1_x_at

Description gb:NM_188170.1
DB_XREF= gi:34903423
GEN=OSJNBa0077F02.23
TID=Os.7307.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.7307 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0516D04.3 (P0516D04.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OSJNBa0077F02.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g280104/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g499804/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g523303/11hypothetical protein
LOC_Os11g252803/11retrotransposon protein, putative, unclassified
LOC_Os02g444302/11transposon protein, putative, unclassified
LOC_Os04g014392/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g313402/11hypothetical protein
LOC_Os12g096002/11retrotransposon protein, putative, unclassified
LOC_Os01g432102/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g071102/11hypothetical protein
LOC_Os12g070902/11retrotransposon protein, putative, unclassified
LOC_Os12g378202/11retrotransposon protein, putative, unclassified
LOC_Os02g188902/11transposon protein, putative, unclassified
LOC_Os10g346502/11retrotransposon protein, putative, unclassified
LOC_Os02g491002/11retrotransposon protein, putative, unclassified
LOC_Os07g303102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g363102/11hypothetical protein
LOC_Os04g215101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g253501/11transposon protein, putative, unclassified
LOC_Os05g066201/11retrotransposon protein, putative, unclassified
LOC_Os03g392001/11hypothetical protein
LOC_Os05g448301/11transposon protein, putative, unclassified
LOC_Os03g280201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g206701/11retrotransposon protein, putative, unclassified
LOC_Os01g425701/11transposon protein, putative, unclassified
LOC_Os01g104101/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27970Os.48059.1.S1_at11/113+16044632..16047956Pre-mRNA splicing factor PRP17, putative, expressed
LOC_Os03g27980OsAffx.25262.1.S1_at11/113+16049767..16051245Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os03g27990Os.49145.1.S1_at11/113+16051673..16057545leucine-rich repeat transmembrane protein kinase 1, putative, expressed
LOC_Os03g27990Os.49144.1.S1_s_at11/113+16051673..16057545leucine-rich repeat transmembrane protein kinase 1, putative, expressed
LOC_Os03g28000OsAffx.13087.1.S1_at10/113+16066758..16067252hypothetical protein
LOC_Os03g28010Os.7307.3.S1_x_at4/113+16072033..16081962transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g28020Os.7307.3.S1_x_at1/113+16083440..16087442transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g28030OsAffx.25263.1.S1_at10/113+16092365..16093935hypothetical protein
LOC_Os03g28030OsAffx.28894.1.S1_at1/113+16092365..16093935hypothetical protein
LOC_Os03g28040OsAffx.25264.1.S1_at11/113+16096028..16096471Zinc finger, C3HC4 type family protein
LOC_Os03g28050OsAffx.3352.1.S1_at11/113+16100399..16100959hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7307.3.S1_x_at--323--403171Chr12:9400586..9400609 (24 bp)
CGTTGCCGCCTCCTAGACGGCTTGT
NONE
Os.7307.3.S1_x_at--842--3612Chr07:13085491..13085515 (25 bp)
CTTGTGGAGGAGTTGCCTGGTGATC
NONE
Os.7307.3.S1_x_at--800--8011Chr07:13085496..13085520 (25 bp)
GGAGGAGTTGCCTGGTGATCTCTCC
NONE
Os.7307.3.S1_x_at--155--991Chr07:13085498..13085522 (25 bp)
AGGAGTTGCCTGGTGATCTCTCCGA
NONE
Os.7307.3.S1_x_at--1028--1231Chr07:13085501..13085525 (25 bp)
AGTTGCCTGGTGATCTCTCCGAGAA
NONE
Os.7307.3.S1_x_at--615--4272Chr09:3425078..3425098 (21 bp)
CCTGGTGATCTCTCCGAGAAGATTG
NONE
Os.7307.3.S1_x_at--19--3912Chr09:3425078..3425099 (22 bp)
CTGGTGATCTCTCCGAGAAGATTGT
NONE
Os.7307.3.S1_x_at--1080--86112Chr09:3450548..3450571 (24 bp)
TGGTGATCTCTCCGAGAAGATTGTG
LOC_Os09g07110
Os.7307.3.S1_x_at--389--125124Chr12:17844918..17844942 (25 bp)
AGATTGTGGAGGAGGCCCGGCGCCG
NONE
Os.7307.3.S1_x_at--1031--45381Chr12:9400653..9400677 (25 bp)
GCCCGGCGCCGGTTTGTGAGTGGTT
NONE
Os.7307.3.S1_x_at--249--687177Chr12:10685549..10685573 (25 bp)
GTTTGTGAGTGGTTTGGAGTTCACC
NONE
Target Sequence 
CGTTGCCGCCTCCTAGACGGCTTGTGGAGGAGTTGCCTGGTGATCTCTCCGAGAAGATTGTGGAGGAGGCCCGGCGCCGG
TTTGTGAGTGGTTTGGAGTTCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7307.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis