Browse Element(s) Details


Os.7315.2.S1_x_at

Description gb:AK102920.1
DB_XREF= gi:32988129
TID=Os.7315.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7315 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033114B16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033114B16, full insert sequence.
FL= gb:AK102920.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3446011/11DegP protease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34450OsAffx.23944.2.S1_at11/115+20331707..20335380AS2, putative, expressed
LOC_Os05g34450Os.35524.1.S3_at1/115+20331707..20335380AS2, putative, expressed
LOC_Os05g34460Os.7315.2.S1_x_at11/115+20350211..20354764DegP protease, putative, expressed
LOC_Os05g34460Os.7315.1.S1_at10/115+20350211..20354764DegP protease, putative, expressed
LOC_Os05g34470Os.13995.1.S1_at11/115+20355189..20357037expressed protein
LOC_Os05g34480Os.53543.1.A1_at11/115+20359578..20362920expressed protein
LOC_Os05g34490OsAffx.30677.5.S1_x_at11/115+20365054..20367044hypothetical protein
LOC_Os05g34490OsAffx.30677.1.S1_x_at5/115+20365054..20367044hypothetical protein
LOC_Os05g34500Os.52658.1.S1_at11/115+20372362..20373077expressed protein
LOC_Os05g34510OsAffx.27159.1.S1_at10/115+20374231..20375850hypothetical protein
LOC_Os05g34510Os.19995.1.S1_at1/115+20374231..20375850hypothetical protein
LOC_Os05g34520OsAffx.27160.1.S1_at11/115+20378572..20384642Ulp1 protease family, C-terminal catalytic domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0010206biological_processphotosystem II repair
GO:0009533cellular_componentchloroplast stromal thylakoid
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004295molecular_functiontrypsin activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7315.2.S1_x_at--632--6291Chr05:20354148..20354172 (25 bp)
GATGAGCGGGTGATCGTCCTGAAAT
LOC_Os05g34460
Os.7315.2.S1_x_at--866--231Chr05:20354171..20354195 (25 bp)
ATATCAGAACGCAAAGCTCGCCACG
LOC_Os05g34460
Os.7315.2.S1_x_at--51--2391Chr05:20354208..20354232 (25 bp)
AAACGGCACAGGATACCGTCGGCCA
LOC_Os05g34460
Os.7315.2.S1_x_at--270--6211Chr05:20354298..20354322 (25 bp)
GAGGCATCATGCACTAGCTAACATT
LOC_Os05g34460
Os.7315.2.S1_x_at--193--151Chr05:20354370..20354394 (25 bp)
ATTAGCACGGTTCAATTTCCAGAGA
LOC_Os05g34460
Os.7315.2.S1_x_at--999--10551Chr05:20354451..20354475 (25 bp)
TTCGGCCGTCTCAGTTTTGACGTGA
LOC_Os05g34460
Os.7315.2.S1_x_at--463--11Chr05:20354486..20354510 (25 bp)
CTCCGGTTTCCCTCAGCAAATAAGA
LOC_Os05g34460
Os.7315.2.S1_x_at--276--1231Chr05:20354524..20354548 (25 bp)
AGTTCTTCAGCCTCATGATATGTTG
LOC_Os05g34460
Os.7315.2.S1_x_at--529--2452Chr05:20354550..20354574 (25 bp)
AACACAAATTATCTTCCCCATTTCT
LOC_Os05g34460
Os.7315.2.S1_x_at--76--4391Chr05:20354577..20354601 (25 bp)
CCAATATTTCTCATTCTTTCACCAA
LOC_Os05g34460
Os.7315.2.S1_x_at--1063--3651Chr05:20354592..20354616 (25 bp)
CTTTCACCAAAAGTGCCGTGGCACA
LOC_Os05g34460
Target Sequence 
GATGAGCGGGTGATCGTCCTGAAATATCAGAACGCAAAGCTCGCCACGTCCCGGATCTTAAAACGGCACAGGATACCGTC
GGCCATATCTGCTGACNTNGTCGACGAACAGGCGACTGACGACGGTGAGGAGGCGACTAATGGTGAGATCGAGGCATCAT
GCACTAGCTAACATTGTTTTGCATACTTAGCTAGGCAATTACCTGNGGAAGAATAGATAGATATTAGCACGGTTCAATTT
CCAGAGACAGACGCAGTGAGGCGAGGACTGCCCGGAGCACTGCGCTGGTTGCAGCGGCTCCTGTTCGGCCGTCTCAGTTT
TGACGTGAGGGGTGGGTGCTCCGGTTTCCCTCAGCAAATAAGAAGTGAAGAACCCAAGTTCTTCAGCCTCATGATATGTT
GTAACACAAATTATCTTCCCCATTTCTTCCCAATATTTCTCATTCTTTCACCAAAAGTGCCGTGGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7315.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis