Browse Element(s) Details


Os.7318.1.A1_at

Description gb:CB619345
DB_XREF= gi:29614332
DB_XREF=OSIIEa03N09.r
CLONE=OSIIEa03N09
TID=Os.7318.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=4
UG=Os.7318 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_196286.1 (A.thaliana) gamma-tubulin interacting protein-like (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2737011/11Spc97/Spc98 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27320NANA9+16609314..16610273hypothetical protein
LOC_Os09g27330Os.55306.1.S1_at11/119+16617064..16617782expressed protein
LOC_Os09g27340OsAffx.31213.3.S1_s_at11/119+16621011..16623375ATPase, AAA family protein
LOC_Os09g27350OsAffx.31213.2.S1_at11/119+16623949..16627431Protein kinase domain containing protein
LOC_Os09g27350OsAffx.31213.1.S1_x_at9/119+16623949..16627431Protein kinase domain containing protein
LOC_Os09g27350OsAffx.31213.3.S1_s_at7/119+16623949..16627431Protein kinase domain containing protein
LOC_Os09g27360OsAffx.17930.1.S1_at11/119+16630080..16630607hypothetical protein
LOC_Os09g27370Os.7318.1.A1_at11/119+16632329..16635433Spc97/Spc98 family protein, expressed
LOC_Os09g27370Os.7318.2.S1_at11/119+16632329..16635433Spc97/Spc98 family protein, expressed
LOC_Os09g27380OsAffx.30055.1.S1_at11/119+16639056..16639825Zinc finger, C3HC4 type family protein
LOC_Os09g27390OsAffx.30056.1.S1_at11/119+16643542..16646280transposon protein, putative, unclassified
LOC_Os09g27400OsAffx.30057.1.S1_at10/119+16647821..16649401expressed protein
LOC_Os09g27410NANA9+16652112..16652372hypothetical protein
LOC_Os09g27420Os.14842.1.S1_at11/119+16653815..16657634Formate-tetrahydrofolate ligase, putative, expressed
LOC_Os09g27430OsAffx.6415.1.S1_at11/119+16658578..16659351hypothetical protein
LOC_Os09g27440OsAffx.17932.1.S1_at11/119+16659907..16660425hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007020biological_processmicrotubule nucleation
GO:0005635cellular_componentnuclear envelope
GO:0009898cellular_componentinternal side of plasma membrane
GO:0015631molecular_functiontubulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7318.1.A1_at--123--651Chr09:16634838..16634862 (25 bp)
ATGCATTTATCGCTCAGTTACCTAT
LOC_Os09g27370
Os.7318.1.A1_at--945--6511Chr09:16634876..16634900 (25 bp)
GATTTGAAATTCCTACTCTTCCGCT
LOC_Os09g27370
Os.7318.1.A1_at--2--3651Chr09:16634893..16634917 (25 bp)
CTTCCGCTTAGACTTCACTGAATAC
LOC_Os09g27370
Os.7318.1.A1_at--669--11Chr09:16634914..16634938 (25 bp)
ATACTACAGTCGTGTTTCGTCTAAC
LOC_Os09g27370
Os.7318.1.A1_at--21--9871Chr09:16635020..16635044 (25 bp)
TACACCTTAGCCCTGCTGATTGATA
LOC_Os09g27370
Os.7318.1.A1_at--467--2311Chr09:16635057..16635081 (25 bp)
AAAGGCATGGTCTGCCACTTTCATT
LOC_Os09g27370
Os.7318.1.A1_at--981--211Chr09:16635079..16635103 (25 bp)
ATTTGTCCTGAACCTCCTGTTGAAT
LOC_Os09g27370
Os.7318.1.A1_at--412--1731Chr09:16635106..16635220 (25 bp)
ACCCTTTAAGAGTTTGCCCACGCAT
LOC_Os09g27370
Os.7318.1.A1_at--452--5351Chr09:16635226..16635250 (25 bp)
GAAGTTGGAGGCTTGCTGCCATGCA
LOC_Os09g27370
Os.7318.1.A1_at--230--3591Chr09:16635335..16635359 (25 bp)
CATTTTCCACCCTGATTTTTTAGAG
LOC_Os09g27370
Os.7318.1.A1_at--915--8291Chr09:16635374..16635398 (25 bp)
GGCTTCTCCTTACCAGTTTGTATTC
LOC_Os09g27370
Target Sequence 
ATGCATTTATCGCTCAGTTACCTATGCAACAGCATGTTGATTTGAAATTCCTACTCTTCCGCTTAGACTTCACTGAATAC
TACAGTCGTGTTTCGTCTAACAAATGAAGATNTGTTCCTGATGTGGAAAAAGTAGGGAGTTAGATTTACTCTTTGGTTTG
GGGTTTGTGAGGCATTCTTTTGTACACCTTAGCCCTGCTGATTGATATTTGGTCATTTGAAAGGCATGGTCTGCCACTTT
CATTTGTCCTGAACCTCCTGTTGAATTCACCCTTTAAGAGTTTGCCCACGCATGCCATGAAGTTGGAGGCTTGCTGCCAT
GCATTCTGAACAACTATAGTGTACAAAATTGATGTAAGTTTACTCTGGTTTTCACTTTTAGATGAACTGGTGTACATTTC
ATGCACACATTTTCCACCCTGATTTTTTAGAGTTGCATTGTGTGGGGGCTTCTCCTTACCAGTTTGTATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7318.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis