Browse Element(s) Details


Os.7342.1.S1_at

Description gb:AK064187.1
DB_XREF= gi:32974205
TID=Os.7342.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7342 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033129D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-C02, full insert sequence.
FL= gb:AK064187.1 gb:AK103441.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5749011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57440OsAffx.3094.1.S1_at11/112+35199142..35200416Protein kinase domain containing protein, expressed
LOC_Os02g57450Os.10387.1.S1_a_at10/112+35201744..35205557Serine/threonine protein phosphatase PP1, putative, expressed
LOC_Os02g57460Os.47495.1.S1_at11/112+35209394..35211898Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g57470Os.49090.1.S1_at9/112+35212441..35215228tetratricopeptide repeat, putative, expressed
LOC_Os02g57480Os.49640.1.S1_at11/112+35216188..35218000Transferase family protein, expressed
LOC_Os02g57480OsAffx.14722.1.S1_x_at5/112+35216188..35218000Transferase family protein, expressed
LOC_Os02g57490Os.7342.1.S1_at11/112+35221429..35222740expressed protein
LOC_Os02g57500Os.7461.1.S1_at11/112+35224869..35228093expressed protein
LOC_Os02g57510Os.8459.1.S1_at10/112+35228257..35232158BS14b, putative, expressed
LOC_Os02g57510Os.50252.1.S1_x_at1/112+35228257..35232158BS14b, putative, expressed
LOC_Os02g57520OsAffx.3095.1.S1_at11/112+35236753..35237943DNA-binding protein, putative, expressed
LOC_Os02g57530Os.8423.1.S1_a_at11/112+35245712..35249336His Kinase A domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7342.1.S1_at--552--651Chr02:35221944..35221968 (25 bp)
ATGCAGCAGCATTGCTCCAAGGCGG
LOC_Os02g57490
Os.7342.1.S1_at--1054--9451Chr02:35221897..35221921 (25 bp)
TCTGGCCCAGGCGATGATGAGATCA
LOC_Os02g57490
Os.7342.1.S1_at--1107--5151Chr02:35221833..35221857 (25 bp)
GCAACGCTTTGCATGCAGGAGTTAG
LOC_Os02g57490
Os.7342.1.S1_at--1136--10351Chr02:35221767..35221791 (25 bp)
TTTTTATCAGTGCAACGTCATAGTG
LOC_Os02g57490
Os.7342.1.S1_at--210--3191Chr02:35221739..35221763 (25 bp)
CAATTAGTCTGCTTCATGATGATGA
LOC_Os02g57490
Os.7342.1.S1_at--456--10011Chr02:35221684..35221708 (25 bp)
TAGCTTCTTGCAACAAGGTCTTGGT
LOC_Os02g57490
Os.7342.1.S1_at--725--7831Chr02:35221662..35221686 (25 bp)
GGTAATGACATCACACATCACTGGA
LOC_Os02g57490
Os.7342.1.S1_at--685--6891Chr02:35221613..35221637 (25 bp)
GTATAATCTTGCTGACCTAGTTGGT
LOC_Os02g57490
Os.7342.1.S1_at--156--10051Chr02:35221596..35221620 (25 bp)
TAGTTGGTGCAATCTTCTTATTTCC
LOC_Os02g57490
Os.7342.1.S1_at--853--3571Chr02:35221495..35221519 (25 bp)
CATTTCATATGTGTCTCAGGCGATG
LOC_Os02g57490
Os.7342.1.S1_at--237--2431Chr02:35221449..35221473 (25 bp)
AAAATTTTCTGATCTATCCCTAGTT
LOC_Os02g57490
Target Sequence 
ATGCAGCAGCATTGCTCCAAGGCGGTGGACGCCGGCGAGCTCCAGTATCTGGCCCAGGCGATGATGAGATCAACCTCCAA
CTANCTCTCAGTAGAAAGAAAAATCAAACAATGCAACGCTTTGCATGCAGGAGTTAGAGAGTGGACAAGCAAAAATTTAG
CCTGTGTACTACTGANCTTTTTTATCAGTGCAACGTCATAGTGAAGCAATTAGTCTGCTTCATGATGATGATTAGTACGT
AGTACTACTAAATAACACTAATAGCTTCTTGCAACAAGGTCTTGGTAATGACATCACACATCACTGGACCCTGGCCATGC
ATGCATGTCCAAGTATAATCTTGCTGACCTAGTTGGTGCAATCTTCTTATTTCCAAAATTTGTTTGAGTGTTTAGCTAGG
TTAAATCGAGACAGATGAAACAAGGTTCTGAATTCAGTATCTATGTGTGTCATTTCATATGTGTCTCAGGCGATGAACTA
GTGTAAAACTGCATTAAAAATTTTCTGATCTATCCCTAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7342.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis