Browse Element(s) Details


Os.7377.1.S1_at

Description gb:AK073266.1
DB_XREF= gi:32983289
TID=Os.7377.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7377 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033029A20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033029A20, full insert sequence.
FL= gb:AK073266.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4348011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43440Os.5369.1.S1_at11/118+27346219..27348261Cytochrome P450 family protein, expressed
LOC_Os08g43450Os.52913.1.A1_at11/118+27353542..27355955MYB-like protein 2, putative, expressed
LOC_Os08g43460OsAffx.17496.1.S1_at11/118+27359553..27361658hypothetical protein
LOC_Os08g43470Os.5563.1.S1_at11/118+27364363..27368225ER lumen protein retaining receptor containing protein, expressed
LOC_Os08g43470OsAffx.30150.5.S1_s_at1/118+27364363..27368225ER lumen protein retaining receptor containing protein, expressed
LOC_Os08g43480Os.7377.1.S1_at11/118+27369446..27372129Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g43490OsAffx.17497.1.S1_s_at11/118+27372890..27375658DnaJ domain containing protein, expressed
LOC_Os08g43500Os.53131.1.S1_at11/118+27378353..27380711Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os08g43510OsAffx.17498.1.S1_at11/118+27386665..27388360Thaumatin-like protein 1 precursor, putative, expressed
LOC_Os08g43520OsAffx.19542.3.S1_x_at7/118+27392083..27396305retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7377.1.S1_at--1108--8991Chr08:27371386..27371410 (25 bp)
TGAATCATTGGTTGCACTTCCTTGC
LOC_Os08g43480
Os.7377.1.S1_at--964--9771Chr08:27371706..27371728 (23 bp)
TAAGGTATGCCCTATGTGCAGTGCT
LOC_Os08g43480
Os.7377.1.S1_at--635--771Chr08:27371717..27371741 (25 bp)
ATGTGCAGTGCTGAAGTTCCTACTT
LOC_Os08g43480
Os.7377.1.S1_at--716--9891Chr08:27371737..27371761 (25 bp)
TACTTCACAGGACACCCGGGCATGA
LOC_Os08g43480
Os.7377.1.S1_at--855--4191Chr08:27371751..27371775 (25 bp)
CCCGGGCATGACATCACTACATATT
LOC_Os08g43480
Os.7377.1.S1_at--657--5051Chr08:27371813..27371837 (25 bp)
GCAGCTTGATACTTTCTGTCATCGG
LOC_Os08g43480
Os.7377.1.S1_at--586--8751Chr08:27371879..27371903 (25 bp)
TGTACTTGTGTGCTTCCTTTGCCAT
LOC_Os08g43480
Os.7377.1.S1_at--8--611Chr08:27371902..27371926 (25 bp)
ATGCCGCTACATTGGGTCGTGGTTA
LOC_Os08g43480
Os.7377.1.S1_at--84--8571Chr08:27371921..27371945 (25 bp)
TGGTTAAGACGCTCATTGTCGCCCA
LOC_Os08g43480
Os.7377.1.S1_at--351--3111Chr08:27372010..27372034 (25 bp)
AATTTATAGTCTCCTGGTGGCCTGA
LOC_Os08g43480
Os.7377.1.S1_at--893--4471Chr08:27372029..27372053 (25 bp)
GCCTGAGGCCTGTTGTAGCCTATAA
LOC_Os08g43480
Target Sequence 
TGAATCATTGGTTGCACTTCCTTGCAAGCATTCATACCATTCTGAATGCATAAACCAATGGCTGCAATTAAATAAGGTAT
GCCCTATGTGCAGTGCTGAAGTTCCTACTTCACAGGACACCCGGGCATGACATCACTACATATTGTAGCCATTATGGGCG
TATAATTTAAAAGAAGTAGCGGCAGCTTGATACTTTCTGTCATCGGTGAAATGGAAGCATCAGGAGCTGGTGGATTGTTC
AGGTCTCTGTACTTGTGTGCTTCCTTTGCCATGCCGCTACATTGGGTCGTGGTTAAGACGCTCATTGTCGCCCATGTATG
ATTTGATTAGATGTGAAATAGTTATTACATGGTTGCATCATTCAAATTCAAAGCAATTAATTTATAGTCTCCTGGTGGCC
TGAGGCCTGTTGTAGCCTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7377.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis