Browse Element(s) Details


Os.7420.1.S1_s_at

Description gb:AU101027
DB_XREF= gi:9865277
DB_XREF=AU101027
CLONE=C63287
TID=Os.7420.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.7420 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5265011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52614OsAffx.4157.1.S1_at11/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614OsAffx.4157.1.S1_x_at11/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.27242.1.S1_x_at11/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.27242.1.S1_at11/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.53743.1.S1_at10/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.54061.1.S1_x_at10/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.27084.2.S1_at1/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.27084.2.S1_x_at1/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52614Os.17112.1.S1_at1/114+31066297..31088605Protein kinase domain containing protein, expressed
LOC_Os04g52630Os.52059.1.S1_at11/114+31089687..31091174Protein kinase domain containing protein, expressed
LOC_Os04g52630Os.27084.2.S1_at1/114+31089687..31091174Protein kinase domain containing protein, expressed
LOC_Os04g52630OsAffx.4157.1.S1_x_at1/114+31089687..31091174Protein kinase domain containing protein, expressed
LOC_Os04g52630Os.27084.2.S1_x_at1/114+31089687..31091174Protein kinase domain containing protein, expressed
LOC_Os04g52640Os.27084.2.S1_a_at11/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.27084.1.A1_a_at11/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.27084.2.S1_at11/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.27084.2.S1_x_at11/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.27084.1.A2_at10/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52640Os.47793.1.A1_at6/114+31098527..31108979SHR5-receptor-like kinase, putative, expressed
LOC_Os04g52650Os.7420.1.S1_s_at11/114+31110670..31112273expressed protein
LOC_Os04g52650OsAffx.26576.1.S1_at10/114+31110670..31112273expressed protein
LOC_Os04g52660Os.27304.1.A1_at11/114+31121219..31125663expressed protein
LOC_Os04g52670OsAffx.14380.1.S1_s_at11/114+31130595..31131661Auxin responsive protein, expressed
LOC_Os04g52680OsAffx.26577.1.S1_at4/114+31135177..31136141hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7420.1.S1_s_at--593--8751Chr04:31111592..31111616 (25 bp)
TGTATCACCAAAGAGGCTGAGCTGA
LOC_Os04g52650
Os.7420.1.S1_s_at--116--631Chr04:31111625..31111649 (25 bp)
ATGCTGATTCATGCGGCGGAAGATC
LOC_Os04g52650
Os.7420.1.S1_s_at--83--5351Chr04:31111643..31111667 (25 bp)
GAAGATCACCCCTACTGGTTTGTAT
LOC_Os04g52650
Os.7420.1.S1_s_at--1137--2311Chr04:31111676..31111700 (25 bp)
AAAGTCCGGCTGTATGCCTTAAGAT
LOC_Os04g52650
Os.7420.1.S1_s_at--314--5871Chr04:31111715..31111739 (25 bp)
GAGCCTGAATATATTCTTGCCGCAG
LOC_Os04g52650
Os.7420.1.S1_s_at--976--3511Chr04:31111744..31111880 (25 bp)
CATGATGGGCATCACGCGAGAAGCC
LOC_Os04g52650
Os.7420.1.S1_s_at--923--4071Chr04:31111872..31111896 (25 bp)
CGAGAAGCCAACTTGACGTGTGAGT
LOC_Os04g52650
Os.7420.1.S1_s_at--343--2971Chr04:31111923..31111947 (25 bp)
AATGGACGCGAGTTCTTCAGCATCT
LOC_Os04g52650
Os.7420.1.S1_s_at--343--10531Chr04:31111938..31111962 (25 bp)
TTCAGCATCTTTATCCGGACTAGGA
LOC_Os04g52650
Os.7420.1.S1_s_at--907--8091Chr04:31111960..31111984 (25 bp)
GGACCTTGGCATCTATGTACTACAT
LOC_Os04g52650
Os.7420.1.S1_s_at--172--231Chr04:31111994..31112018 (25 bp)
ATATTCTGCTGTGGGAAAGCCTACT
LOC_Os04g52650
Target Sequence 
TGTATCACCAAAGAGGCTGAGCTGATGTGCGCAATGCTGATTCATGCGGCGGAAGATCACCCCTACTGGTTTGTATTGTG
CAACAAAGTCCGGCTGTATGCCTTAAGATTTATGGCCTACAAAGAGCCTGAATATATTCTTGCCGCAGCCGCCATGATGG
GCATCACGCGAGAAGCCAACTTGACGTGTGAGTTGGTGAAGGAAAGGCACAAGGATAAAAATGGACGCGAGTTCTTCAGC
ATCTTTATCCGGACTAGGACCTTGGCATCTATGTACTACATACTCAAAGAATATTCTGCTGTGGGAAAGCCTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7420.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis