Browse Element(s) Details


Os.7451.1.S1_at

Description gb:AK104279.1
DB_XREF= gi:32989488
TID=Os.7451.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7451 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-004-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-004-F07, full insert sequence.
FL= gb:AK073052.1 gb:AK098932.1 gb:AK104279.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5582011/11Thioredoxin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55760Os.55608.1.S1_at11/113+31688428..31694221myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os03g55770Os.428.1.S1_at2/113+31694949..31695203expressed protein
LOC_Os03g55784Os.4995.1.S1_at7/113+31697109..31700416expressed protein
LOC_Os03g55784Os.8266.2.S1_at7/113+31697109..31700416expressed protein
LOC_Os03g55800Os.8266.1.A1_at11/113+31703932..31705926Cytochrome P450 74A1, chloroplast precursor, putative, expressed
LOC_Os03g55810NANA3+31714944..31715444hypothetical protein
LOC_Os03g55820Os.7451.1.S1_at11/113+31717263..31720334Thioredoxin family protein, expressed
LOC_Os03g55830Os.57276.1.S1_at11/113+31724092..31727019transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g55840Os.53613.1.S1_at10/113+31727027..31728145expressed protein
LOC_Os03g55850Os.8017.1.S1_at11/113+31729548..31732200cold acclimation protein COR413-PM1, putative, expressed
LOC_Os03g55860Os.46012.2.S1_x_at8/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.27088.1.A1_x_at6/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.46012.3.S1_x_at4/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.10263.1.S1_at2/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.54691.1.S1_x_at1/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.45902.1.A1_x_at1/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860OsAffx.22442.1.S1_x_at1/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860OsAffx.9929.1.S1_at1/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55870Os.17653.1.S1_at11/113+31741251..31743092integral membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010190biological_processcytochrome b6f complex assembly
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0016671molecular_functionoxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7451.1.S1_at--340--1971Chr03:31718058..31718082 (25 bp)
ACTGTACCTCATGCACGGGTTGTTG
LOC_Os03g55820
Os.7451.1.S1_at--490--10791Chr03:31718039..31718063 (25 bp)
TTGTTGGCCAATTCTCGAGTGCAGA
LOC_Os03g55820
Os.7451.1.S1_at--815--811Chr03:31717592..31717616 (25 bp)
ATGGTCTGCATGCTCAGTCCTGGAA
LOC_Os03g55820
Os.7451.1.S1_at--344--7251Chr03:31717576..31717600 (25 bp)
GTCCTGGAACCAAGCATTAGCGCGT
LOC_Os03g55820
Os.7451.1.S1_at--57--151Chr03:31717561..31717585 (25 bp)
ATTAGCGCGTGGACATTGGTACTGA
LOC_Os03g55820
Os.7451.1.S1_at--202--8791Chr03:31717534..31717558 (25 bp)
TGTTCCAACTCCCTTAACGTATATG
LOC_Os03g55820
Os.7451.1.S1_at--694--231Chr03:31717460..31717484 (25 bp)
ATATTTGAATCGGTGCATGTCTGCA
LOC_Os03g55820
Os.7451.1.S1_at--489--651Chr03:31717415..31717439 (25 bp)
ATGCAGACATGTGTTGCAGCCGCAA
LOC_Os03g55820
Os.7451.1.S1_at--637--1671Chr03:31717398..31717422 (25 bp)
AGCCGCAAGCATGCCCATGTTAGTA
LOC_Os03g55820
Os.7451.1.S1_at--408--1691Chr03:31717365..31717389 (25 bp)
ACCAATCACCACTAGTTTCTACTTA
LOC_Os03g55820
Os.7451.1.S1_at--786--10191Chr03:31717289..31717313 (25 bp)
TATATATGCTTCTGCTACTCTTGGG
LOC_Os03g55820
Target Sequence 
ACTGTACCTCATGCACGGGTTGTTGGCCAATTCTCGAGTGCAGAATCCCGAAAAGTTCATCAAGTTGCTGATCCAAGAAG
CCATGGCTAACAATAGCTTGTGGTGATCAATTTTAGTGGTAATGCTAAGACCTATTGACAAGAGGCGATATGGTCTGCAT
GCTCAGTCCTGGAACCAAGCATTAGCGCGTGGACATTGGTACTGAGCTGTTCCAACTCCCTTAACGTATATGATTTTGCT
GGTAGAACCAGGCATTCGGCTACAGCATTGATATGTTGGTGATATTTGAATCGGTGCATGTCTGCATACATATTTGCATA
ATGAAAATGCAGACATGTGTTGCAGCCGCAAGCATGCCCATGTTAGTAAACTGTTTACCAATCACCACTAGTTTCTACTT
AGAATTGCAATAGAATGTTTATATACAGGAGCTTACTAAAANTTGTGTGATATATATATGCTTCTGCTACTCTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7451.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis