Browse Element(s) Details


Os.7469.1.S1_at

Description gb:AK062384.1
DB_XREF= gi:32972402
TID=Os.7469.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7469 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-102-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-B12, full insert sequence.
FL= gb:AK062384.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2355011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23520Os.9398.2.S1_at11/117+13286278..13291643expressed protein
LOC_Os07g23520Os.9398.1.S1_a_at10/117+13286278..13291643expressed protein
LOC_Os07g23530OsAffx.16381.4.S1_at11/117+13292110..13292430hypothetical protein
LOC_Os07g23540OsAffx.16381.2.S1_x_at11/117+13293115..13303996expressed protein
LOC_Os07g23540OsAffx.16381.1.S1_x_at7/117+13293115..13303996expressed protein
LOC_Os07g23540OsAffx.16381.3.S1_x_at4/117+13293115..13303996expressed protein
LOC_Os07g23550Os.7469.1.S1_at11/117+13311880..13314898expressed protein
LOC_Os07g23560OsAffx.28555.1.S1_at11/117+13320480..13321350hypothetical protein
LOC_Os07g23570Os.9017.1.S1_x_at11/117+13322237..13324546Cytochrome P450 family protein, expressed
LOC_Os07g23580NANA7+13328336..13329246hypothetical protein
LOC_Os07g23590NANA7+13335527..13335820hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7469.1.S1_at--797--6111Chr07:13313396..13313420 (25 bp)
GAGTGACGACAGTCTGCACTATTGT
LOC_Os07g23550
Os.7469.1.S1_at--1094--4712Chr07:13313425..13313449 (25 bp)
GCTGGTGCTTTGATGGGCTTTGTTA
LOC_Os07g23550
Os.7469.1.S1_at--713--7531Chr07:13313463..13313487 (25 bp)
GTGGCAGCAGGACAAATTGCACCTT
LOC_Os07g23550
Os.7469.1.S1_at--226--71Chr07:13313478..13313502 (25 bp)
ATTGCACCTTCATCATTTTCAGTTC
LOC_Os07g23550
Os.7469.1.S1_at--1017--7451Chr07:13314609..13314633 (25 bp)
GTGGGACTCGCGTGGCAAATTTTGA
LOC_Os07g23550
Os.7469.1.S1_at--116--10351Chr07:13314693..13314717 (25 bp)
TTTTTTGTACTAGCGCAACCGTTTG
LOC_Os07g23550
Os.7469.1.S1_at--24--2631Chr07:13314709..13314733 (25 bp)
AACCGTTTGATCTTTGTCCTTGTGT
LOC_Os07g23550
Os.7469.1.S1_at--838--191Chr07:13314780..13314804 (25 bp)
ATTTGTACTCTGTACTCCGTACGTA
LOC_Os07g23550
Os.7469.1.S1_at--932--4591Chr07:13314836..13314860 (25 bp)
GCGAACATCTATCTGTACCTGCTTT
LOC_Os07g23550
Os.7469.1.S1_at--740--9971Chr07:13314851..13314875 (25 bp)
TACCTGCTTTTTTGCCGCTGATAAT
LOC_Os07g23550
Os.7469.1.S1_at--701--6451Chr07:13314870..13314894 (25 bp)
GATAATTGCTACTCTCTCTTTTTCA
LOC_Os07g23550
Target Sequence 
GAGTGACGACAGTCTGCACTATTGTGNCAGCTGGTGCTTTGATGGGCTTTGTTATAATAGGTCAGAGGTGGCAGCAGGAC
AAATTGCACCTTCATCATTTTCAGTTCAATATCGGCACTGAGGGCGNNAACAGAATCGTTGGAATATTCAGCCGTTGNAA
GGATGCGCTTCCCAGNAGTCAGCAGCTCAAGTCTCTGCTTCCGACTCGCGTGCTCCCTCAAGAGCCANTGAGTGCGTGAG
TGGGACTCGCGTGGCAAATTTTGATGGCAGGNATCGCTATAATTGAGTTTTTGTTTTCTGATATGGTTGGAGGTAGCAGA
TTNTTTTTTGTACTAGCGCAACCGTTTGATCTTTGTCCTTGTGTAAATTTGTGGGGGTATTGATCTTGCTCGTGNAACCA
AAACATCATTATTTGTACTCTGTACTCCGTACGTANTAATTGTAAAAATACAGGAGAACANCACACGCGAACATCTATCT
GTACCTGCTTTTTTGCCGCTGATAATTGCTACTCTCTCTTTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7469.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis