Browse Element(s) Details


Os.7470.1.S1_at

Description gb:AK106156.1
DB_XREF= gi:32991365
TID=Os.7470.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7470 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-208-A05, full insert sequence.
FL= gb:AK106156.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4648011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46450Os.15343.1.S1_at10/114+27332264..27340546Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g46460Os.26493.1.S1_a_at11/114+27344135..27347489Acetylglutamate kinase, putative, expressed
LOC_Os04g46470Os.56287.1.S1_at10/114+27348729..27351393dioxygenase, putative, expressed
LOC_Os04g46480Os.7470.1.S1_at11/114+27351357..27353621expressed protein
LOC_Os04g46490Os.53049.1.S1_at11/114+27356566..27357899Major intrinsic protein, expressed
LOC_Os04g46500NANA4+27363235..27365489retrotransposon protein, putative, unclassified
LOC_Os04g46510NANA4+27366326..27369025retrotransposon protein, putative, unclassified
LOC_Os04g46520NANA4+27369647..27371087retrotransposon protein, putative, unclassified
LOC_Os04g46530Os.10263.1.S1_at1/114+27373144..27377055Major intrinsic protein, expressed
LOC_Os04g46540OsAffx.14301.1.S1_at11/114+27377842..27378513hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7470.1.S1_at--1023--871Chr04:27352026..27352050 (25 bp)
ATGGCCTTGTCAACTGATAAGTCTG
LOC_Os04g46480
Os.7470.1.S1_at--18--6471Chr04:27352011..27352035 (25 bp)
GATAAGTCTGTATGGGATGCCGTGA
LOC_Os04g46480
Os.7470.1.S1_at--690--8151Chr04:27351772..27351796 (25 bp)
GGAAACCACCCAAGCAAAGATCAAG
LOC_Os04g46480
Os.7470.1.S1_at--1153--611Chr04:27351651..27351675 (25 bp)
ATGCTCGCAGTGTTCGTCTTCATTG
LOC_Os04g46480
Os.7470.1.S1_at--559--7391Chr04:27351604..27351628 (25 bp)
GTGATGCCAAAAATTCGTCGACTTC
LOC_Os04g46480
Os.7470.1.S1_at--775--3151Chr04:27351593..27351617 (25 bp)
AATTCGTCGACTTCACATTTGGTGG
LOC_Os04g46480
Os.7470.1.S1_at--16--2091Chr04:27351579..27351603 (25 bp)
ACATTTGGTGGTCTGTTAGCTGTGT
LOC_Os04g46480
Os.7470.1.S1_at--941--7931Chr04:27351551..27351575 (25 bp)
GGATATGTTCTAGCCTTTTAAATTC
LOC_Os04g46480
Os.7470.1.S1_at--53--7871Chr04:27351500..27351524 (25 bp)
GGTATCATTCTTAGTTGTCAGTTCA
LOC_Os04g46480
Os.7470.1.S1_at--624--1331Chr04:27351451..27351475 (25 bp)
AGACATCAAGATTCTCAGTGGAGGT
LOC_Os04g46480
Os.7470.1.S1_at--1001--7751Chr04:27351432..27351456 (25 bp)
GGAGGTCTTATATGTTTACCCTATG
LOC_Os04g46480
Target Sequence 
ATGGCCTTGTCAACTGATAAGTCTGTATGGGATGCCGTGATGAAAAATGAGGTGGTGCAAGAATTCAGGAAGTCCTTTCA
GGATGCTAAGGAGGCTGATCCCAATGGAAGTTCTTCTGCTTNTCCTGGAGTGATGAAGTGGGTCATGGAAACCACCCAAG
CAAAGATCAAGGAATTCCTTGAGAGCATACTTAAGCTTGTGAACATGCTCTTTCAAGCTCAGAGTGAGGACTATGATTTG
TATGACGATACAGTGAGAATGTCCTTCATGCTCGCAGTGTTCGTCTTCATTGTGGTGACTGTGGCTCGCATTAAGTGATG
CCAAAAATTCGTCGACTTCACATTTGGTGGTCTGTTAGCTGTGTACAGGATATGTTCTAGCCTTTTAAATTCTTGTCGAA
TGGGTTAAGATCATGGATGGTATCATTCTTAGTTGTCAGTTCAAGAACTTTCATTTTAAAATTGCCAAGACATCAAGATT
CTCAGTGGAGGTCTTATATGTTTACCCTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7470.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis