Browse Element(s) Details


Os.7529.1.S1_at

Description gb:AK071264.1
DB_XREF= gi:32981287
TID=Os.7529.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7529 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023083M07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083M07, full insert sequence.
FL= gb:AK069042.1 gb:AK071264.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g264307/11retrotransposon protein, putative, unclassified
LOC_Os03g427801/11IBR domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26410OsAffx.17908.1.S1_x_at11/119+15949527..15949966NA
LOC_Os09g26420Os.5850.1.S1_at11/119+15958400..15961886AP2 domain containing protein, expressed
LOC_Os09g26430Os.7529.1.S2_at11/119+15973480..15978873retrotransposon protein, putative, unclassified
LOC_Os09g26430Os.7529.1.S1_at7/119+15973480..15978873retrotransposon protein, putative, unclassified
LOC_Os09g26440NANA9+15979639..15979959expressed protein
LOC_Os09g26460Os.50359.1.S1_at11/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45982.1.A1_x_at10/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45817.1.S1_at10/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460Os.45982.1.A1_at9/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26460OsAffx.18435.1.S1_x_at1/119+15983330..15989756zinc finger family protein, putative, expressed
LOC_Os09g26470OsAffx.17910.1.S1_at11/119+15990280..15995928IBR domain containing protein, expressed
LOC_Os09g26480OsAffx.17911.1.S1_at11/119+16001196..16002357hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7529.1.S1_at--114--9773Chr03:28981414..28981438 (25 bp)
TAATGTGATTCACTCCACCTGACTG
NONE
Os.7529.1.S1_at--1042--9212Chr03:28981427..28981451 (25 bp)
TCCACCTGACTGACATTGCTCAAAG
NONE
Os.7529.1.S1_at--83--3551Chr09:15979452..15979476 (25 bp)
CATCGTGATGAACCTGCTTGTCAGC
NONE
Os.7529.1.S1_at--314--5151Chr09:15979429..15979453 (25 bp)
GCAACACAGTTGTACCGGATGAGCT
NONE
Os.7529.1.S1_at--308--9973Chr12:10392641..10392665 (25 bp)
TACCGGATGAGCTACAGAACACTGT
NONE
Os.7529.1.S1_at--105--5834Chr12:10392701..10392725 (25 bp)
GACCTGTTAGGCACCGAGTATGTAA
NONE
Os.7529.1.S1_at--861--8653Chr12:10387619..10387643 (25 bp)
TGGGCCATATGAGCACCATGTCCAG
NONE
Os.7529.1.S1_at--892--773Chr12:10387636..10387660 (25 bp)
ATGTCCAGGCTGTCGATAGTTGCGT
NONE
Os.7529.1.S1_at--463--1813Chr12:10387748..10387772 (25 bp)
ACCCTGTCGGGTTGGTGAAATCCAT
NONE
Os.7529.1.S1_at--1013--5573Chr12:10387764..10387788 (25 bp)
GAAATCCATCTGTGTGTGTGTATCG
NONE
Os.7529.1.S1_at--749--9393Chr12:10387786..10387810 (25 bp)
TCGTTGTTCTGTTTGGGCGATTCTT
NONE
Target Sequence 
TAATGTGATTCACTCCACCTGACTGACATTGCTCAAAGTTGAGCAACAAGACTTGTCCATCGTGATGAACCTGCTTGTCA
GCAACACAGTTGTACCGGATGAGCTACAGAACACTGTCAAGACCAAGGAGGTTAAGCAGACTAAGGAAGGAAGACCTGTT
AGGCACCGAGTATGTAATCCTAGAGTGAGTGGGCCGGAATGGGCCATATGAGCACCATGTCCAGGCTGTCGATAGTTGCG
TGTGAGAGAGAAAGCATCTTAAAACTAACTCTGTATTCATTTGGATGAGTTGAGGATGAACTAGGCGGCGAAGGCGGCGG
CGGCATCAACCCTGTCGGGTTGGTGAAATCCATCTGTGTGTGTGTATCGTTGTTCTGTTTGGGCGATTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7529.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis