Browse Element(s) Details


Os.7573.1.S1_at

Description gb:AK103054.1
DB_XREF= gi:32988263
TID=Os.7573.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7573 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033117I21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033117I21, full insert sequence.
FL= gb:AK103054.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4914011/11Ribosomal RNA methyltransferase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49110OsAffx.15992.1.S1_at11/116+29756047..29760821Delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed
LOC_Os06g49110Os.7836.1.S1_s_at10/116+29756047..29760821Delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed
LOC_Os06g49120Os.26393.1.S1_at11/116+29761521..29765747NmrA-like family protein, expressed
LOC_Os06g49120OsAffx.15993.1.S1_at11/116+29761521..29765747NmrA-like family protein, expressed
LOC_Os06g49130OsAffx.28181.1.S1_at11/116+29766908..29779666TAZ zinc finger family protein, expressed
LOC_Os06g49140Os.7573.1.S1_at11/116+29781086..29783933Ribosomal RNA methyltransferase 1, putative, expressed
LOC_Os06g49150OsAffx.5151.1.S1_at11/116+29785582..29787682Exostosin-3, putative, expressed
LOC_Os06g49160Os.22683.1.S1_at10/116+29788100..29789677thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed
LOC_Os06g49170NANA6+29790165..29794255Calcium binding EGF domain containing protein
LOC_Os06g49180Os.7717.1.S1_a_at11/116+29797173..29800155uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os06g49180OsAffx.15994.1.S1_x_at11/116+29797173..29800155uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os06g49190Os.11169.1.S1_a_at11/116+29806826..29807453nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os06g49200Os.25325.1.A1_at11/116+29807496..29810844CUE domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008168molecular_functionmethyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7573.1.S1_at--602--2311Chr06:29783046..29783069 (24 bp)
AAAGTAGCCGGAACTCAAGCATCGA
LOC_Os06g49140
Os.7573.1.S1_at--929--1451Chr06:29783322..29783346 (25 bp)
AGAATTATTCGCCTCCCGAAGGATT
LOC_Os06g49140
Os.7573.1.S1_at--547--2411Chr06:29783527..29783551 (25 bp)
AAACAAGGTCTACATCCCATTTCTG
LOC_Os06g49140
Os.7573.1.S1_at--955--3571Chr06:29783544..29783568 (25 bp)
CATTTCTGGCTTGCGGTGACCTCAG
LOC_Os06g49140
Os.7573.1.S1_at--382--5831Chr06:29783561..29783585 (25 bp)
GACCTCAGTGGTTACGATTCGGATC
LOC_Os06g49140
Os.7573.1.S1_at--964--6551Chr06:29783576..29783600 (25 bp)
GATTCGGATCGTTCTTACCCACTAA
LOC_Os06g49140
Os.7573.1.S1_at--358--1071Chr06:29783610..29783634 (25 bp)
AGGGAGGATCCTACCAGAGCTTGGA
LOC_Os06g49140
Os.7573.1.S1_at--846--2432Chr10:3445328..3445356 (23 bp)
AAAAGGTCGCCAGCCATGGCATTGG
NONE
Os.7573.1.S1_at--233--251Chr06:29783715..29783739 (25 bp)
ATATCAGCAAATTATCCCTCGACTC
LOC_Os06g49140
Os.7573.1.S1_at--311--6871Chr06:29783762..29783786 (25 bp)
GTTTGTGTTCTTGTAACTGCCAACC
LOC_Os06g49140
Os.7573.1.S1_at--780--1971Chr06:29783777..29783801 (25 bp)
ACTGCCAACCCTGTGGAATTTGCAA
LOC_Os06g49140
Target Sequence 
AAAGTAGCCGGAACTCAAGCATCGAGGCGTTTGCAGTTTGTGAGAATTATTCGCCTCCCGAAGGATTTAAGGAAAAAGAT
TTATATCACCTGCTAGAGAAAGTGGGGACTCCTTCTGGGGCTGATGATTTAGACTGCAGAAGTGGATGGTTAGAGGGACC
AAACAAGGTCTACATCCCATTTCTGGCTTGCGGTGACCTCAGTGGTTACGATTCGGATCGTTCTTACCCACTAACAAGCA
CAGAGGGAGGATCCTACCAGAGCTTGGATCCAGTCCAGCCTCCAATTGCTCCACCTTACAAAACCGCACTGGAGATGAAA
AAGGTCGCCAGCCATGGCATTGGAGCAGATATCAGCAAATTATCCCTCGACTCCTGAACTACACTNTGGATCGCTGTTTG
TGTTCTTGTAACTGCCAACCCTGTGGAATTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7573.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis