Browse Element(s) Details


Os.7586.1.S1_at

Description gb:AK102727.1
DB_XREF= gi:32987936
TID=Os.7586.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7586 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033105N07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033105N07, full insert sequence.
FL= gb:AK058872.1 gb:AK102727.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2795011/11cp protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27900OsAffx.27048.1.S1_at11/115+16205034..16205498hypothetical protein
LOC_Os05g27910OsAffx.27049.1.S1_at11/115+16206606..16207526hypothetical protein
LOC_Os05g27920Os.10964.1.S1_at10/115+16211369..16218543phox domain-containing protein, putative, expressed
LOC_Os05g27930Os.7718.1.S1_at11/115+16218769..16222240AP2 domain containing protein, expressed
LOC_Os05g27940Os.12203.1.S1_at11/115+16224545..1622799040S ribosomal protein S7, putative, expressed
LOC_Os05g27950Os.7586.1.S1_at11/115+16228363..16232319cp protein, putative, expressed
LOC_Os05g27960Os.7077.1.S1_at11/115+16234655..16241260glycosyl hydrolase family 85 protein, putative, expressed
LOC_Os05g27960Os.27744.1.S1_at1/115+16234655..16241260glycosyl hydrolase family 85 protein, putative, expressed
LOC_Os05g27970OsAffx.27050.1.S1_x_at11/115+16242826..16243626hypothetical protein
LOC_Os05g27980OsAffx.4449.1.S1_at11/115+16249450..16250290LOB domain protein 12, putative, expressed
LOC_Os05g27980OsAffx.3523.1.S1_x_at1/115+16249450..16250290LOB domain protein 12, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7586.1.S1_at--804--2691Chr05:16231807..16231831 (25 bp)
AAGCTAACCGTGTACATTCCTTCAG
LOC_Os05g27950
Os.7586.1.S1_at--331--9251Chr05:16231824..16231848 (25 bp)
TCCTTCAGCTTGTGATGTCGGGTAC
LOC_Os05g27950
Os.7586.1.S1_at--289--2231Chr05:16231847..16231871 (25 bp)
ACAAGGATTCGTCTGTTCTGCGATT
LOC_Os05g27950
Os.7586.1.S1_at--535--10591Chr05:16231862..16231886 (25 bp)
TTCTGCGATTCTTTACCTGTGTGAC
LOC_Os05g27950
Os.7586.1.S1_at--455--1771Chr05:16231876..16231900 (25 bp)
ACCTGTGTGACTGGCTACCTGGAGA
LOC_Os05g27950
Os.7586.1.S1_at--1024--7611Chr05:16231902..16231926 (25 bp)
GGGAAAGCTCTCTGATATCGAAGGC
LOC_Os05g27950
Os.7586.1.S1_at--574--4111Chr05:16231982..16232006 (25 bp)
CGAAGGTTCATTTCACTGCTGGTGT
LOC_Os05g27950
Os.7586.1.S1_at--1040--5331Chr05:16232007..16232031 (25 bp)
GAAGAAGACCCGCAGCCGTGACGCA
LOC_Os05g27950
Os.7586.1.S1_at--958--1011Chr05:16232036..16232060 (25 bp)
AGGTAGTCAGAGATGGTATCCCCAT
LOC_Os05g27950
Os.7586.1.S1_at--525--3111Chr05:16232185..16232209 (25 bp)
AATATTGATTGTCCGGCCCAAGAGT
LOC_Os05g27950
Os.7586.1.S1_at--329--751Chr05:16232296..16232319 (24 bp)
ATGTTTGGCACCACTTCAAGTCTCG
LOC_Os05g27950
Target Sequence 
AAGCTAACCGTGTACATTCCTTCAGCTTGTGATGTCGGGTACAAGGATTCGTCTGTTCTGCGATTCTTTACCTGTGTGAC
TGGCTACCTGGAGAAGGGAAAGCTCTCTGATATCGAAGGCTTGAAGACGAAAGTGCTTGTTTGGACCAAGGTGACTGCCA
TCAAGACTGAGGGATCGAAGGTTCATTTCACTGCTGGTGTGAAGAAGACCCGCAGCCGTGACGCATATGAGGTAGTCAGA
GATGGTATCCCCATAGACAAGTTCTGAGCTTGTANCTGCCATGAAAATGTGATGTAATTAATTAGTTGACGCCTTCTACA
ACAAATATCAATTGTCATATCTCGTGTTATGACCTATTTAACTGAACTGTATTGCCATAATATTGATTGTCCGGCCCAAG
AGTGTTTCTCAGCNCCTTAAAAATTTGGTGCTTATTTGGTTGTGATTGTGAATCTTGTAGACGGTTTTATGTTTACTTAG
TTTAAGGCCATGTTTGGCACCACTTCAAGTCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7586.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis