Browse Element(s) Details


Os.7664.1.S1_at

Description gb:AK060071.1
DB_XREF= gi:32970089
TID=Os.7664.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7664 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-210-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-306-A06, full insert sequence.
FL= gb:AK104442.1 gb:AK102943.1 gb:AK060071.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5690010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56860Os.17584.1.S1_at11/112+34847918..34849684Chalcone and stilbene synthases, C-terminal domain containing protein, expressed
LOC_Os02g56870OsAffx.12675.1.S1_at11/112+34855907..34856271hypothetical protein
LOC_Os02g56880Os.51812.1.S1_at11/112+34856686..34867013Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os02g56880OsAffx.1264.1.S1_x_at1/112+34856686..34867013Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os02g56890OsAffx.24901.1.S1_at11/112+34871730..34871975hypothetical protein
LOC_Os02g56900Os.7664.1.S1_at10/112+34873717..34875127expressed protein
LOC_Os02g56910OsAffx.12676.1.S1_at11/112+34876958..34882553Sterol esterification protein, putative
LOC_Os02g56920Os.27093.1.S1_at11/112+34883792..34888004CER1 protein, putative, expressed
LOC_Os02g56930Os.7078.1.S1_at11/112+34894566..34895380expressed protein
LOC_Os02g56940NANA2+34895801..34897381expressed protein
LOC_Os02g56950Os.52320.1.S1_at9/112+34898357..34904943myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os02g56950OsAffx.3091.1.S1_at6/112+34898357..34904943myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7664.1.S1_at--705--4411Chr02:34874017..34874041 (25 bp)
GCCACCATGCAGCAGAGCTAGACGA
LOC_Os02g56900
Os.7664.1.S1_at--987--2151Chr02:34873981..34874005 (25 bp)
ACACCACCATACATTCGACGCGATG
LOC_Os02g56900
Os.7664.1.S1_at--539--9371Chr02:34873967..34873991 (25 bp)
TCGACGCGATGATGCGTGTCGCAAT
LOC_Os02g56900
Os.7664.1.S1_at--1130--7451Chr02:34873952..34873976 (25 bp)
GTGTCGCAATCGCAATTACCGAGTT
LOC_Os02g56900
Os.7664.1.S1_at--559--5311Chr02:34873896..34873920 (25 bp)
GAAGGTGATTTCTGTAGCGTATTGA
LOC_Os02g56900
Os.7664.1.S1_at--811--6771Chr02:34873865..34873889 (25 bp)
GTTACTGTGTGTGAACCTGGACTGT
LOC_Os02g56900
Os.7664.1.S1_at--769--4251Chr02:34873850..34873874 (25 bp)
CCTGGACTGTTCTGCTTAAATTCGA
LOC_Os02g56900
Os.7664.1.S1_at--965--3151Chr02:34873832..34873856 (25 bp)
AATTCGATAATCTTTCTCTTGTCTA
LOC_Os02g56900
Os.7664.1.S1_at--285--9531Chr02:34873818..34873842 (25 bp)
TCTCTTGTCTACTATCCGATGGATG
LOC_Os02g56900
Os.7664.1.S1_at--848--1871Chr02:34873789..34873813 (25 bp)
ACGATAACCCATTCTCCATTATTGA
LOC_Os02g56900
Os.7664.1.S1_at--1042--6471Chr02:34873717..34873741 (25 bp)
GATACTACTATTGTCGATTTCATTC
NONE
Target Sequence 
GCCACCATGCAGCAGAGCTAGACGAGAGAGACACACACACCACCATACATTCGACGCGATGATGCGTGTCGCAATCGCAA
TTACCGAGTTTTTACGGAGTAGTTAACTTCTTTATGAATGAGAAGGTGATTTCTGTAGCGTATTGATTGTTTGTTACTGT
GTGTGAACCTGGACTGTTCTGCTTAAATTCGATAATCTTTCTCTTGTCTACTATCCGATGGATGGATAACGATAACCCAT
TCTCCATTATTGAATAGACAAAGCATGTTTGTGGTGTCTGGTGATCAGACTGTTAACTGTGATACTACTATTGTCGATTT
CATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7664.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis