Browse Element(s) Details


Os.7716.1.S1_at

Description gb:AK058951.1
DB_XREF= gi:32968969
TID=Os.7716.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7716 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1088C09.29 (B1088C09.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-A09, full insert sequence.
FL= gb:AK058951.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6143011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61360OsAffx.2378.1.S1_at11/111+35822814..35823216hypothetical protein
LOC_Os01g61370Os.29834.2.S1_at10/111+35823833..35825262expressed protein
LOC_Os01g61380Os.5740.1.S1_at11/111+35825868..35828594Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g61390Os.34655.1.S1_at11/111+35828845..35831901transposon protein, putative, unclassified, expressed
LOC_Os01g61400Os.19035.1.S1_at10/111+35832362..35835369expressed protein
LOC_Os01g61410Os.47958.1.A1_x_at11/111+35835716..35839960Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os01g61410Os.25236.1.S1_x_at10/111+35835716..35839960Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os01g61420Os.47928.1.S2_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.47928.1.S3_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.47928.1.S1_at11/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61420Os.27437.1.A1_x_at10/111+35840380..35844395Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g61430Os.7716.1.S1_at11/111+35845527..35846372expressed protein
LOC_Os01g61440Os.32153.1.S1_at10/111+35852376..35854441expressed protein
LOC_Os01g61440Os.32153.2.S1_x_at6/111+35852376..35854441expressed protein
LOC_Os01g61450OsAffx.2379.1.S1_at9/111+35857592..35859404hypothetical protein
LOC_Os01g61450Os.55478.1.S1_at2/111+35857592..35859404hypothetical protein
LOC_Os01g61460Os.20717.1.S1_at11/111+35865324..35871179expressed protein
LOC_Os01g61460Os.46498.1.S1_at1/111+35865324..35871179expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7716.1.S1_at--147--2531Chr01:35845771..35845795 (25 bp)
AACTTTCTGGTGGAGCTATTCAGCA
LOC_Os01g61430
Os.7716.1.S1_at--615--5951Chr01:35845710..35845734 (25 bp)
GAGCAACTTACCTCAGATGCTGTTT
LOC_Os01g61430
Os.7716.1.S1_at--412--6351Chr01:35845695..35845719 (25 bp)
GATGCTGTTTTCCTACCATGATGAG
LOC_Os01g61430
Os.7716.1.S1_at--466--8871Chr01:35845677..35845701 (25 bp)
TGATGAGATTGCCTATACCCGTGAC
LOC_Os01g61430
Os.7716.1.S1_at--291--7371Chr01:35845657..35845681 (25 bp)
GTGACATTTCCTTCTACTACTTTGA
LOC_Os01g61430
Os.7716.1.S1_at--334--2331Chr01:35845631..35845655 (25 bp)
AAAGTTTTGTCGTCCAATATGGTGC
LOC_Os01g61430
Os.7716.1.S1_at--1079--6871Chr01:35845604..35845628 (25 bp)
GTATTTTACCATGGCATCTCTGGCT
LOC_Os01g61430
Os.7716.1.S1_at--528--4971Chr01:35845591..35845615 (25 bp)
GCATCTCTGGCTCAATCAACAACTG
LOC_Os01g61430
Os.7716.1.S1_at--763--1951Chr01:35845570..35845594 (25 bp)
ACTGTTCAATTTGTCTACATCCGTG
LOC_Os01g61430
Os.7716.1.S1_at--877--551Chr01:35845552..35845576 (25 bp)
ATCCGTGACATCTTCTTTGGCTAAT
LOC_Os01g61430
Os.7716.1.S1_at--759--10232Chr05:15671109..15671133 (25 bp)
TTTGGCTAATGGCTACTGTGAGAGT
NONE
Target Sequence 
AACTTTCTGGTGGAGCTATTCAGCAGAAGAGTGCACGCATCGGGGCAAATGACAACATGTAGAGCAACTTACCTCAGATG
CTGTTTTCCTACCATGATGAGATTGCCTATACCCGTGACATTTCCTTCTACTACTTTGAGAAAGTTTTGTCGTCCAATAT
GGTGCTAGTATTTTACCATGGCATCTCTGGCTCAATCAACAACTGTTCAATTTGTCTACATCCGTGACATCTTCTTTGGC
TAATGGCTACTGTGAGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7716.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis