Browse Element(s) Details


Os.7724.1.S1_at

Description gb:AK072293.1
DB_XREF= gi:32982316
TID=Os.7724.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7724 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023017P18, full insert sequence.
FL= gb:AK072293.1 gb:AK105143.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6801011/11TBC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67990OsAffx.29313.1.S1_at1/111+39839109..39841837Transposable element protein, putative, MuDR
LOC_Os01g68000OsAffx.2431.1.S1_at11/111+39850487..39854076TERMINAL EAR1, putative, expressed
LOC_Os01g68010Os.7724.1.S1_at11/111+39865000..39867945TBC domain containing protein, expressed
LOC_Os01g68020Os.24338.1.A1_at11/111+39871084..39875470BTB/POZ domain containing protein, expressed
LOC_Os01g68020Os.11316.1.S1_at11/111+39871084..39875470BTB/POZ domain containing protein, expressed
LOC_Os01g68030Os.4675.1.S1_at5/111+39876192..39877575expressed protein
LOC_Os01g68040Os.26355.1.S1_at11/111+39878283..39882103CorA-like Mg2+ transporter protein, expressed
LOC_Os01g68050Os.8422.1.S1_at11/111+39889590..39892515Transmembrane amino acid transporter protein, expressed
LOC_Os01g68050Os.47836.1.A1_at4/111+39889590..39892515Transmembrane amino acid transporter protein, expressed
LOC_Os01g68060Os.11396.1.S1_at11/111+39892600..39896895Copine family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7724.1.S1_at--312--1031Chr01:39865819..39865843 (25 bp)
AGGTACTCTCTCAAAACTGTCGCAA
LOC_Os01g68010
Os.7724.1.S1_at--922--131Chr01:39865491..39865515 (25 bp)
ATTAATCCTCAGTTCTACGCATTCC
LOC_Os01g68010
Os.7724.1.S1_at--821--91Chr01:39865471..39865495 (25 bp)
ATTCCGGTGGATTACGCTACTGTTA
LOC_Os01g68010
Os.7724.1.S1_at--1089--8031Chr01:39865441..39865465 (25 bp)
GGAGTTCAACTTTGCTGACACTATT
LOC_Os01g68010
Os.7724.1.S1_at--636--971Chr01:39865294..39865318 (25 bp)
AGGAGACCTTGCTCAGAATCTGCTG
LOC_Os01g68010
Os.7724.1.S1_at--543--7351Chr01:39865270..39865294 (25 bp)
GTGCAATGCTGATTCTTGTCCGAAA
LOC_Os01g68010
Os.7724.1.S1_at--75--1831Chr01:39865245..39865269 (25 bp)
ACGCCTATTGGCTGGTGATTTCACT
LOC_Os01g68010
Os.7724.1.S1_at--804--5471Chr01:39865144..39865168 (25 bp)
GAACTCAACTGAACCTCGTCTGGAA
LOC_Os01g68010
Os.7724.1.S1_at--800--9051Chr01:39865069..39865093 (25 bp)
TGCATTGCAGAACCACGTACCATTA
LOC_Os01g68010
Os.7724.1.S1_at--482--631Chr01:39865041..39865065 (25 bp)
ATGCTAATCACAGCCAGTCCATTAA
LOC_Os01g68010
Os.7724.1.S1_at--246--3091Chr01:39865013..39865037 (25 bp)
AATAATTTGGATCCCTACCTGCTTG
LOC_Os01g68010
Target Sequence 
AGGTACTCTCTCAAAACTGTCGCAACTTGTTGCGAAGTATGATGGAGAGCTTCAGCGTTATTTGGAAATAACAACAGAAA
TTAATCCTCAGTTCTACGCATTCCGGTGGATTACGCTACTGTTAACCCAGGAGTTCAACTTTGCTGACACTATTCACATA
TGGGACACACTATTAAGTGATCCTGATGGTCCTCAGGAGACCTTGCTCAGAATCTGCTGTGCAATGCTGATTCTTGTCCG
AAAACGCCTATTGGCTGGTGATTTCACTTCCAATCTCAAGCTCCTGCAGAACTACCCCCCAACAAACATCAGCCACCTCC
TTTACGTCGCAAACAAGCTGCACTGAACTCAACTGAACCTCGTCTGGAAGACCTGAAACACACTACCCCTGCTACAATGT
ATTCGGTAAAAACTGTGACTGCATTGCAGAACCACGTACCATTACGAATGCTAATCACAGCCAGTCCATTAATAAAATAA
TTTGGATCCCTACCTGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7724.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis