Browse Element(s) Details


Os.7750.1.S1_at

Description gb:AK102507.1
DB_XREF= gi:32987716
TID=Os.7750.1
CNT=16
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.7750 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033095F16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033095F16, full insert sequence.
FL= gb:AK102507.1 gb:AK111948.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0643011/11expressed protein
LOC_Os08g062101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06380OsAffx.24129.1.S1_at10/112+3188102..3190109uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os02g06390Os.5009.1.S1_at10/112+3191320..3194131expressed protein
LOC_Os02g06400Os.49870.1.S1_at11/112+3197172..3203165Plant protein family protein, expressed
LOC_Os02g06410Os.55564.1.S1_at11/112+3204084..3206330CBS domain containing protein, expressed
LOC_Os02g06420OsAffx.24130.1.S1_x_at11/112+3207497..3208306hypothetical protein
LOC_Os02g06430Os.7750.1.S1_at11/112+3212390..3216632expressed protein
LOC_Os02g06440OsAffx.11917.1.S1_x_at9/112+3216940..3217809hypothetical protein
LOC_Os02g06440OsAffx.11917.1.S1_at8/112+3216940..3217809hypothetical protein
LOC_Os02g06450OsAffx.2521.1.S1_at11/112+3219169..3219516hypothetical protein
LOC_Os02g06460Os.49520.1.A1_at5/112+3220489..3225189hypothetical protein
LOC_Os02g06460Os.8872.1.S1_at1/112+3220489..3225189hypothetical protein
LOC_Os02g06480Os.8872.1.S1_at11/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.8872.3.S1_at11/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.8872.1.S2_at10/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.10300.1.S1_x_at1/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480OsAffx.1884.1.S1_x_at1/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06470Os.8872.2.S1_at11/112+3227679..3229222F-box domain containing protein, expressed
LOC_Os02g06490OsAffx.24131.1.S1_at10/112+3234378..3237519Vacuolar protein sorting-associated protein VPS4, putative
LOC_Os02g06500Os.23048.1.S1_at11/112+3237584..3249730DEAD/DEAH box helicase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7750.1.S1_at--517--3231Chr02:3216033..3216057 (25 bp)
CAAGAACAAAATCAAGGACCCCTCG
LOC_Os02g06430
Os.7750.1.S1_at--187--6251Chr02:3216080..3216104 (25 bp)
GATGGAGTCGGAGAACGGTCTAACA
LOC_Os02g06430
Os.7750.1.S1_at--582--5451Chr02:3216092..3216116 (25 bp)
GAACGGTCTAACAGAGAAGTGGCAC
LOC_Os02g06430
Os.7750.1.S1_at--329--8911Chr02:3216302..3216326 (25 bp)
TGAGCTGCCACAAAACTGTATTCAG
LOC_Os02g06430
Os.7750.1.S1_at--230--2391Chr02:3216314..3216338 (25 bp)
AAACTGTATTCAGGCTTCAGCAGGT
LOC_Os02g06430
Os.7750.1.S1_at--198--931Chr02:3216325..3216349 (25 bp)
AGGCTTCAGCAGGTTGTGTTCTTTC
LOC_Os02g06430
Os.7750.1.S1_at--7--5492Chr08:3419706..3419827 (24 bp)
GAACTTCTCTCAAAGCAACTTTCAA
LOC_Os08g06210
Os.7750.1.S1_at--126--3271Chr02:3216367..3216391 (25 bp)
CAACTTTCAATGTCAGTGGTGGTCA
LOC_Os02g06430
Os.7750.1.S1_at--1157--3191Chr02:3216374..3216398 (25 bp)
CAATGTCAGTGGTGGTCACAGGAAT
LOC_Os02g06430
Os.7750.1.S1_at--600--7791Chr02:3216513..3216537 (25 bp)
GGTCCTTTGTTGTGCTCATATTTGA
LOC_Os02g06430
Os.7750.1.S1_at--413--6891Chr02:3216553..3216577 (25 bp)
GTATAGATGCCATTGATGAGGCTAT
LOC_Os02g06430
Target Sequence 
CAAGAACAAAATCAAGGACCCCTCGACCTCGAGCTGATCAGCCTGCTGATGGAGTCGGAGAACGGTCTAACAGAGAAGTG
GCACCCCAACATCCTCCAGAAAGAACTGTATCTCTCCCTTCAGACTCTGGCAACCTGGGTGTGAAGCCTAAGGCTCCTGC
TCGGTCCATTTCAATGCAGCCAGACAAGTCCAGGGGGATTGTACACCCTAGCATGCCGGATTTNGACGAACTAGCTGCTC
GGATCAGTGCTNTGAGGAAGGAATGANTATGAGCTGCCACAAAACTGTATTCAGGCTTCAGCAGGTTGTGTTCTTTCATG
AACTTCTCTCAAAGCAACTTTCAATGTCAGTGGTGGTCACAGGAATCAGGGGATCTCTCCTGGTGGTGGTAATCTTGCTT
GCAGTGCTATATGCCTAGATAGAATAGTACCAAATTAAATGGCAATATTTAGGAATACCATACAATATTGGTTTGGGTGT
GGTCCTTTGTTGTGCTCATATTTGAAAGTGAAACAATCTTGTATAGATGCCATTGATGAGGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7750.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis