Browse Element(s) Details


Os.7801.1.S1_at

Description gb:AK067141.1
DB_XREF= gi:32977159
TID=Os.7801.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7801 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-034-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095J21, full insert sequence.
FL= gb:AK104102.1 gb:AK067141.1 gb:AK104347.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0505011/11Stem-specific protein TSJT1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05040Os.7649.1.S1_at7/1112+2192737..2197849heavy metal-associated domain containing protein, expressed
LOC_Os12g05050Os.7801.1.S1_at11/1112+2214870..2218478Stem-specific protein TSJT1, putative, expressed
LOC_Os12g05060Os.57385.1.S1_at11/1112+2226382..2227895expressed protein
LOC_Os12g05070OsAffx.19501.1.S1_x_at11/1112+2228140..2228805expressed protein
LOC_Os12g05070OsAffx.19501.1.S1_at11/1112+2228140..2228805expressed protein
LOC_Os12g05080Os.12064.1.S1_at11/1112+2230443..2233876expressed protein
LOC_Os12g05090Os.52139.1.S1_at11/1112+2235082..2238401peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os12g05100OsAffx.19502.1.S1_at10/1112+2240328..2243608hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0010044biological_processresponse to aluminum ion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7801.1.S1_at--368--2731Chr12:2215511..2215535 (25 bp)
AAGCACAAGGTGACCGCAGTTCCTG
LOC_Os12g05050
Os.7801.1.S1_at--699--1411Chr12:2215476..2215500 (25 bp)
AGAAATTTGCGGTGCAACCTTCAAG
LOC_Os12g05050
Os.7801.1.S1_at--294--2911Chr12:2215187..2215211 (25 bp)
AAGGATCTACAATCCTCACAGCGCT
LOC_Os12g05050
Os.7801.1.S1_at--174--3311Chr12:2215171..2215195 (25 bp)
CACAGCGCTGCATTAGGAGATTTTT
LOC_Os12g05050
Os.7801.1.S1_at--994--10831Chr12:2215148..2215172 (25 bp)
TTGGATCTCCAGCTGTTGTTGGGAA
LOC_Os12g05050
Os.7801.1.S1_at--685--7491Chr12:2215098..2215122 (25 bp)
GTGGTGTAACATAGTCGCAAGGCAT
LOC_Os12g05050
Os.7801.1.S1_at--887--2931Chr12:2215080..2215104 (25 bp)
AAGGCATGCATCTGATCTGTATCAT
LOC_Os12g05050
Os.7801.1.S1_at--816--4411Chr12:2215032..2215056 (25 bp)
GCCAGCATGGTTAGCACTTTTCAGT
LOC_Os12g05050
Os.7801.1.S1_at--957--7711Chr12:2215003..2215027 (25 bp)
GGGTGTGTGTATGATCTGTATCCTA
LOC_Os12g05050
Os.7801.1.S1_at--787--3871Chr12:2214988..2215012 (25 bp)
CTGTATCCTATGCTGTTCAGGCGGA
LOC_Os12g05050
Os.7801.1.S1_at--153--9051Chr12:2214875..2214899 (25 bp)
TGCAGTTATGCTTGTTGCCGGATAC
LOC_Os12g05050
Target Sequence 
AAGCACAAGGTGACCGCAGTTCCTGCCAAAGAAGAAGAAATTTGCGGTGCAACCTTCAAGGTGGAAGGATCTACAATCCT
CACAGCGCTGCATTAGGAGATTTTTGGATCTCCAGCTGTTGTTGGGAAAGGAAAACTCTGTAGTCTGTAAATGGTGGTGT
AACATAGTCGCAAGGCATGCATCTGATCTGTATCATCATCTTCCGTAAAGACTAGTGCTGCCAGCATGGTTAGCACTTTT
CAGTGTTTGGGTGTGTGTATGATCTGTATCCTATGCTGTTCAGGCGGAAATGAACTTCAGGCCCAGCTGTGTCAGTTGAA
TGTAGTTGTGTTGCAAATAAGTTTTTCTTGTTTGTTATCACTGTGATTGTGTCTTATGCAGTTATGCTTGTTGCCGGATA
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7801.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis