Browse Element(s) Details


OsAffx.19502.1.S1_at

Description tigr:9640.m00431
TID=OsAffx.19502.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0510010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05050Os.7801.1.S1_at11/1112+2214870..2218478Stem-specific protein TSJT1, putative, expressed
LOC_Os12g05060Os.57385.1.S1_at11/1112+2226382..2227895expressed protein
LOC_Os12g05070OsAffx.19501.1.S1_x_at11/1112+2228140..2228805expressed protein
LOC_Os12g05070OsAffx.19501.1.S1_at11/1112+2228140..2228805expressed protein
LOC_Os12g05080Os.12064.1.S1_at11/1112+2230443..2233876expressed protein
LOC_Os12g05090Os.52139.1.S1_at11/1112+2235082..2238401peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os12g05100OsAffx.19502.1.S1_at10/1112+2240328..2243608hypothetical protein
LOC_Os12g05110Os.28109.1.S1_at11/1112+2244334..2248822pyruvate kinase family protein, expressed
LOC_Os12g05110Os.18503.1.S1_at1/1112+2244334..2248822pyruvate kinase family protein, expressed
LOC_Os12g05120Os.26353.1.S2_a_at11/1112+2250186..2253075Leucine Rich Repeat family protein, expressed
LOC_Os12g05130NANA12+2263758..2264336hypothetical protein
LOC_Os12g05137NANA12+2267863..2268350NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19502.1.S1_at--575--5511Chr12:2241573..2241597 (25 bp)
GAAACTTGTAAGTCCACAGGTCCTA
LOC_Os12g05100
OsAffx.19502.1.S1_at--319--4371Chr12:2241586..2241610 (25 bp)
CCACAGGTCCTAATGATGCAGCCAT
LOC_Os12g05100
OsAffx.19502.1.S1_at--653--711Chr12:2241598..2241622 (25 bp)
ATGATGCAGCCATACTTGACCTGTA
LOC_Os12g05100
OsAffx.19502.1.S1_at--122--4731Chr12:2241635..2241659 (25 bp)
GCTGGTTGATGCTGTACACATGACA
LOC_Os12g05100
OsAffx.19502.1.S1_at--969--6871Chr12:2242280..2242304 (25 bp)
GTATTCATTTCTGAACTGCTTGACA
LOC_Os12g05100
OsAffx.19502.1.S1_at--94--4931Chr12:2242297..2242321 (25 bp)
GCTTGACAGTGCCAGAGAGGTTCAT
LOC_Os12g05100
OsAffx.19502.1.S1_at--444--311NONE
ATACCGATGCATGGTGTGGTGCTTT
NONE
OsAffx.19502.1.S1_at--642--7771Chr12:2243005..2243029 (25 bp)
GGTGCTTTGGCAAGAATCCTGTCAA
LOC_Os12g05100
OsAffx.19502.1.S1_at--344--771Chr12:2243034..2243058 (25 bp)
ATGTCTGCAGCGTAGTAATTTCCCA
LOC_Os12g05100
OsAffx.19502.1.S1_at--331--9751Chr12:2243049..2243172 (25 bp)
TAATTTCCCAAGGTGGCCAATTCTT
LOC_Os12g05100
OsAffx.19502.1.S1_at--452--9851Chr12:2243211..2243235 (25 bp)
TAAATTTATCCTTGCAGTCCTTCAA
LOC_Os12g05100
Target Sequence 
GAAACTTGTAAGTCCACAGGTCCTAATGATGCAGCCATACTTGACCTGTACAAAGAAACTGAGCTGGTTGATGCTGTACA
CATGACACAAAGTTCTTCAGAAAGTGTGCAGAGCCCTTCTGATATGTTCTCAAATAATGAAATGAACTCTTCATTTGAAA
CAGATGAAAATCATTCAATTAAATCTTCAAGCGATAGGACTTTGATTGATTTCTACCATAAGCTGAGGGAAGAAACACTG
ACAGTAATATTTCGGAATGGGAAGGATTTTAAGGAAATCTGTGAGAAACTACCTGAAGGTTTTTGTATAGAGGAACATAC
TGCAAAGGATGTATTCATTTCTGAACTGCTTGACAGTGCCAGAGAGGTTCATTTGAAGGATTTTGAGGAAGAATATCATT
TAATAGAAAAGATACCGATGCATGGTGTGGTGCTTTGGCAAGAATCCTGTCAATCAAATGTCTGCAGCGTAGTAATTTCC
CAAGGTGGCCAATTCTTTATTGCTCTTGGGGAGATTTACAGAGTTGCACAGATTCTAAATTTATCCTTGCAGTCCTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19502.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis