Browse Element(s) Details


Os.28109.1.S1_at

Description gb:AK071391.1
DB_XREF= gi:32981414
TID=Os.28109.1
CNT=57
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.28109 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023098A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023098A04, full insert sequence.
FL= gb:AK071391.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0511011/11pyruvate kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05060Os.57385.1.S1_at11/1112+2226382..2227895expressed protein
LOC_Os12g05070OsAffx.19501.1.S1_x_at11/1112+2228140..2228805expressed protein
LOC_Os12g05070OsAffx.19501.1.S1_at11/1112+2228140..2228805expressed protein
LOC_Os12g05080Os.12064.1.S1_at11/1112+2230443..2233876expressed protein
LOC_Os12g05090Os.52139.1.S1_at11/1112+2235082..2238401peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os12g05100OsAffx.19502.1.S1_at10/1112+2240328..2243608hypothetical protein
LOC_Os12g05110Os.28109.1.S1_at11/1112+2244334..2248822pyruvate kinase family protein, expressed
LOC_Os12g05110Os.18503.1.S1_at1/1112+2244334..2248822pyruvate kinase family protein, expressed
LOC_Os12g05120Os.26353.1.S2_a_at11/1112+2250186..2253075Leucine Rich Repeat family protein, expressed
LOC_Os12g05130NANA12+2263758..2264336hypothetical protein
LOC_Os12g05137NANA12+2267863..2268350NA
LOC_Os12g05144OsAffx.16036.1.S1_x_at1/1112+2271193..2272370hypothetical protein
LOC_Os12g05144Os.49257.1.S1_x_at1/1112+2271193..2272370hypothetical protein
LOC_Os12g05151NANA12+2272631..2272884hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0004743molecular_functionpyruvate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28109.1.S1_at--974--9831Chr12:2245693..2245717 (25 bp)
TAAAGTGAAGGCGTCTGTCATAATT
LOC_Os12g05110
Os.28109.1.S1_at--947--4831Chr12:2245556..2245580 (25 bp)
GCTAATTGCCAAGTATAGGCCAACC
LOC_Os12g05110
Os.28109.1.S1_at--628--8731Chr12:2245514..2245538 (25 bp)
TGTCATTCCTCGTCTAAAAACAAAT
LOC_Os12g05110
Os.28109.1.S1_at--953--6371Chr12:2244888..2245303 (25 bp)
GATCCGAGGCATCCAGCTGAATCAA
LOC_Os12g05110
Os.28109.1.S1_at--286--4751Chr12:2244873..2244897 (25 bp)
GCTGAATCAACCAACGCTACAAATG
LOC_Os12g05110
Os.28109.1.S1_at--571--2291Chr12:2244853..2244877 (25 bp)
AAATGAATCCGTTTTGAAGGTTGCT
LOC_Os12g05110
Os.28109.1.S1_at--336--7911Chr12:2244835..2244859 (25 bp)
GGTTGCTCTTGACCACGGTAAAGTT
LOC_Os12g05110
Os.28109.1.S1_at--258--2831Chr12:2244815..2244839 (25 bp)
AAGTTTCTGGTGTGATAAAGTCGCA
LOC_Os12g05110
Os.28109.1.S1_at--126--151Chr12:2244725..2244749 (25 bp)
ATTAGACAAGCAGCTTGTGCTCGTC
LOC_Os12g05110
Os.28109.1.S1_at--250--4811Chr12:2244707..2244731 (25 bp)
GCTCGTCGTCGATGATACTATGGCA
LOC_Os12g05110
Os.28109.1.S1_at--925--6891Chr12:2244635..2244659 (25 bp)
GTATAATCCTATAGCTTCAAATGAG
LOC_Os12g05110
Target Sequence 
TAAAGTGAAGGCGTCTGTCATAATTTGCTTCACATCATCTGGACGTGCTGCAAGGCTAATTGCCAAGTATAGGCCAACCA
TGCCTGTTCTATCTGTTGTCATTCCTCGTCTAAAAACAAATCAACTGAGGTGGAGTTTCACTGGCGCATTTGAAGCAAGA
CAATCGCTCATAGTTAGAGGCCTCTTTCCGATGCTTGCTGATCCGAGGCATCCAGCTGAATCAACCAACGCTACAAATGA
ATCCGTTTTGAAGGTTGCTCTTGACCACGGTAAAGTTTCTGGTGTGATAAAGTCGCATGATCGCGTTGTTGTCTGCCAGA
AGGTGGGAGATTCCTCGGTTGTGAAGATCATTGAGCTGGACGATTAGACAAGCAGCTTGTGCTCGTCGTCGATGATACTA
TGGCATGTTTTGCCAGATTTTGACTAGGCCAAAAACGTTGCTTCTTGGCTATGTATAATCCTATAGCTTCAAATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis