Browse Element(s) Details


Os.26353.1.S2_a_at

Description gb:AK109461.1
DB_XREF= gi:32994670
TID=Os.26353.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26353 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsSUT2 mRNA for sucrose transporter, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-C09, full insert sequence.
FL= gb:AK067030.1 gb:AK109461.1 gb:AB091672.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0512011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05060Os.57385.1.S1_at11/1112+2226382..2227895expressed protein
LOC_Os12g05070OsAffx.19501.1.S1_x_at11/1112+2228140..2228805expressed protein
LOC_Os12g05070OsAffx.19501.1.S1_at11/1112+2228140..2228805expressed protein
LOC_Os12g05080Os.12064.1.S1_at11/1112+2230443..2233876expressed protein
LOC_Os12g05090Os.52139.1.S1_at11/1112+2235082..2238401peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os12g05100OsAffx.19502.1.S1_at10/1112+2240328..2243608hypothetical protein
LOC_Os12g05110Os.28109.1.S1_at11/1112+2244334..2248822pyruvate kinase family protein, expressed
LOC_Os12g05110Os.18503.1.S1_at1/1112+2244334..2248822pyruvate kinase family protein, expressed
LOC_Os12g05120Os.26353.1.S2_a_at11/1112+2250186..2253075Leucine Rich Repeat family protein, expressed
LOC_Os12g05130NANA12+2263758..2264336hypothetical protein
LOC_Os12g05137NANA12+2267863..2268350NA
LOC_Os12g05144OsAffx.16036.1.S1_x_at1/1112+2271193..2272370hypothetical protein
LOC_Os12g05144Os.49257.1.S1_x_at1/1112+2271193..2272370hypothetical protein
LOC_Os12g05151NANA12+2272631..2272884hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26353.1.S2_a_at--439--3831Chr12:2250675..2250699 (25 bp)
CTGCTCCGGTACAAGGACATCGAGG
LOC_Os12g05120
Os.26353.1.S2_a_at--891--711Chr12:2250564..2250588 (25 bp)
ATGATCGAGAGCATCCCGGTGGATC
LOC_Os12g05120
Os.26353.1.S2_a_at--988--4931Chr12:2250554..2250578 (25 bp)
GCATCCCGGTGGATCAGTCGCCGTT
LOC_Os12g05120
Os.26353.1.S2_a_at--878--951Chr12:2250521..2250545 (25 bp)
AGGACAGGGACATCTCCACCATGTC
LOC_Os12g05120
Os.26353.1.S2_a_at--772--6391Chr12:2250490..2250514 (25 bp)
GATCGGCATTACCACTGACGACGGA
LOC_Os12g05120
Os.26353.1.S2_a_at--40--131Chr12:2250483..2250507 (25 bp)
ATTACCACTGACGACGGAGATGGTC
LOC_Os12g05120
Os.26353.1.S2_a_at--351--6031Chr12:2250467..2250491 (25 bp)
GAGATGGTCGTCTCAGCTGCTAGCT
LOC_Os12g05120
Os.26353.1.S2_a_at--864--9651Chr12:2250455..2250479 (25 bp)
TCAGCTGCTAGCTCATCATCATCCT
LOC_Os12g05120
Os.26353.1.S2_a_at--317--9011Chr12:2250408..2250432 (25 bp)
TGAATTCTGAACAACTCTGCCTGCT
LOC_Os12g05120
Os.26353.1.S2_a_at--207--2471Chr12:2250399..2250423 (25 bp)
AACAACTCTGCCTGCTGCATTTTTT
LOC_Os12g05120
Os.26353.1.S2_a_at--995--10591Chr12:2250338..2250362 (25 bp)
TTCTGAAGTCTGAAATTGCTACTGC
LOC_Os12g05120
Target Sequence 
CTGCTCCGGTACAAGGACATCGAGGAGGAGATGGTGGCGATGCTGCACGTCGCGCTGGCGTGCGTCACGCCGCAGCCGGA
GCAGAGGCCATCCATGGCCGACGTGGTGCGGATGATCGAGAGCATCCCGGTGGATCAGTCGCCGTTCCCGGGGGAGGACA
GGGACATCTCCACCATGTCGCCGTCGATCGGCATTACCACTGACGACGGAGATGGTCGTCTCAGCTGCTAGCTCATCATC
ATCCTCCTCCTCATTGATCTTCTTTTCTGAATTCTGAACAACTCTGCCTGCTGCATTTTTTCTGATTTCTGAAATGATNC
TCTGCTCGATCTTGGCATTCTGAAGTCTGAAATTGCTACTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26353.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis