Browse Element(s) Details


Os.52139.1.S1_at

Description gb:AK065114.1
DB_XREF= gi:32975132
TID=Os.52139.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52139 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001O06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001O06, full insert sequence.
FL= gb:AK065114.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0509011/11peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05050Os.7801.1.S1_at11/1112+2214870..2218478Stem-specific protein TSJT1, putative, expressed
LOC_Os12g05060Os.57385.1.S1_at11/1112+2226382..2227895expressed protein
LOC_Os12g05070OsAffx.19501.1.S1_x_at11/1112+2228140..2228805expressed protein
LOC_Os12g05070OsAffx.19501.1.S1_at11/1112+2228140..2228805expressed protein
LOC_Os12g05080Os.12064.1.S1_at11/1112+2230443..2233876expressed protein
LOC_Os12g05090Os.52139.1.S1_at11/1112+2235082..2238401peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os12g05100OsAffx.19502.1.S1_at10/1112+2240328..2243608hypothetical protein
LOC_Os12g05110Os.28109.1.S1_at11/1112+2244334..2248822pyruvate kinase family protein, expressed
LOC_Os12g05110Os.18503.1.S1_at1/1112+2244334..2248822pyruvate kinase family protein, expressed
LOC_Os12g05120Os.26353.1.S2_a_at11/1112+2250186..2253075Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009790biological_processembryonic development
GO:0009826biological_processunidimensional cell growth
GO:0030154biological_processcell differentiation
GO:0048364biological_processroot development
GO:0048366biological_processleaf development
GO:0005634cellular_componentnucleus
GO:0005886cellular_componentplasma membrane
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52139.1.S1_at--1090--9991Chr12:2237453..2237477 (25 bp)
TAGCTGTGAAAAATCCCTGCCATCT
LOC_Os12g05090
Os.52139.1.S1_at--412--9851Chr12:2238088..2238112 (25 bp)
TACAAAGGTCTGTTCGGGCCAAGGC
LOC_Os12g05090
Os.52139.1.S1_at--158--8371Chr12:2238129..2238153 (25 bp)
GGCGTCAAATTTCCTAGTTCTCTTC
LOC_Os12g05090
Os.52139.1.S1_at--163--4311Chr12:2238141..2238165 (25 bp)
CCTAGTTCTCTTCTGGCGATGGCTG
LOC_Os12g05090
Os.52139.1.S1_at--342--871Chr12:2238159..2238183 (25 bp)
ATGGCTGGTCTCCTTAATTGGCTAT
LOC_Os12g05090
Os.52139.1.S1_at--1105--3171Chr12:2238174..2238198 (25 bp)
AATTGGCTATCTTGTTAAACTGTTC
LOC_Os12g05090
Os.52139.1.S1_at--775--6871Chr12:2238250..2238274 (25 bp)
GTATTGACCATCTTGTACTGTAGGT
LOC_Os12g05090
Os.52139.1.S1_at--473--8151Chr12:2238276..2238300 (25 bp)
GGAAATTCGAGTTGTGCAGCACGCA
LOC_Os12g05090
Os.52139.1.S1_at--959--1991Chr12:2238327..2238351 (25 bp)
ACTCCTGACATTTTTGTGCTTCGTG
LOC_Os12g05090
Os.52139.1.S1_at--225--5931Chr12:2238351..2238375 (25 bp)
GAGCATTGGAGCTATGGTTCGTATA
LOC_Os12g05090
Os.52139.1.S1_at--136--5851Chr12:2238376..2238400 (25 bp)
GAGCTTTTAACCTTTTGCTTGTGGG
LOC_Os12g05090
Target Sequence 
TAGCTGTGAAAAATCCCTGCCATCTCAACATGGCCGCATGCCTGATCAAACTGAAGAGATTTGATGAAGCTATCGCACAG
TGTACAATTGTGTTGTCAGAGGATGAAAACAACGTGAAAGCGTTGTTCAGACGAGGAAAAGCTAGAGCTGAACTTGGTCA
AACAGAATCAGCAAGGGAGGACTTCCTGAAGGCCAAGAAGTATTCTCCAGAAGACAAGGAGATCCAGCGCGAGCTTCGGT
CGCTCGCGGAGCAGGATAAAGCTCTGTACCAGAAACNAAAGGAGCTATACAAAGGTCTGTTCGGGCCAAGGCCTGAACCC
AAACCGAAGGCGTCAAATTTCCTAGTTCTCTTCTGGCGATGGCTGGTCTCCTTAATTGGCTATCTTGTTAAACTGTTCAA
ACGCAAGGATGAGTAGGGATAGGACATGTTTTACTGGAAAAATTATGCAGTATTGACCATCTTGTACTGTAGGTTGGAAA
TTCGAGTTGTGCAGCACGCAATCGGTGTCAAATATTGTTGTTAGAAACTCCTGACATTTTTGTGCTTCGTGAGCATTGGA
GCTATGGTTCGTATAGAGCTTTTAACCTTTTGCTTGTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52139.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis