Browse Element(s) Details


Os.57385.1.S1_at

Description gb:AK111428.1
DB_XREF= gi:32996637
TID=Os.57385.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57385 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-H05, full insert sequence.
FL= gb:AK111428.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0506011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05050Os.7801.1.S1_at11/1112+2214870..2218478Stem-specific protein TSJT1, putative, expressed
LOC_Os12g05060Os.57385.1.S1_at11/1112+2226382..2227895expressed protein
LOC_Os12g05070OsAffx.19501.1.S1_x_at11/1112+2228140..2228805expressed protein
LOC_Os12g05070OsAffx.19501.1.S1_at11/1112+2228140..2228805expressed protein
LOC_Os12g05080Os.12064.1.S1_at11/1112+2230443..2233876expressed protein
LOC_Os12g05090Os.52139.1.S1_at11/1112+2235082..2238401peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os12g05100OsAffx.19502.1.S1_at10/1112+2240328..2243608hypothetical protein
LOC_Os12g05110Os.28109.1.S1_at11/1112+2244334..2248822pyruvate kinase family protein, expressed
LOC_Os12g05110Os.18503.1.S1_at1/1112+2244334..2248822pyruvate kinase family protein, expressed
LOC_Os12g05120Os.26353.1.S2_a_at11/1112+2250186..2253075Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57385.1.S1_at--136--2871Chr12:2227471..2227495 (25 bp)
AAGTGGCTGACGTGGACTGTCTGAC
LOC_Os12g05060
Os.57385.1.S1_at--863--8111Chr12:2227484..2227508 (25 bp)
GGACTGTCTGACATGCAGGCCTCCT
LOC_Os12g05060
Os.57385.1.S1_at--104--1791Chr12:2227620..2227644 (25 bp)
ACCCGATTACAAGTTGATGGACCTT
LOC_Os12g05060
Os.57385.1.S1_at--159--8751Chr12:2227648..2227672 (25 bp)
TGTACTTTTCCTAGGCTAACTAACT
LOC_Os12g05060
Os.57385.1.S1_at--1008--2511Chr12:2227665..2227689 (25 bp)
AACTAACTAGGCTTGTGTAGGGACA
LOC_Os12g05060
Os.57385.1.S1_at--890--7411Chr12:2227679..2227703 (25 bp)
GTGTAGGGACAAGGCTTTGGCCCAA
LOC_Os12g05060
Os.57385.1.S1_at--32--1651Chr12:2227744..2227768 (25 bp)
AGCGAGATTATTTTGAGATCCCTCA
LOC_Os12g05060
Os.57385.1.S1_at--1097--100112Chr12:24846001..24846025 (25 bp)
TAGAAATGTTCACCCCTAAACTCAC
NONE
Os.57385.1.S1_at--302--2373Chr12:2227806..2227830 (25 bp)
AAACCGTTCACTGGAGGTCCCATGG
LOC_Os12g05060
Os.57385.1.S1_at--720--1032Chr12:2227820..2227844 (25 bp)
AGGTCCCATGGTAGTATTTGCTCCC
LOC_Os12g05060
Os.57385.1.S1_at--765--10191Chr12:2227834..2227858 (25 bp)
TATTTGCTCCCGGTTTTGCTGACGT
LOC_Os12g05060
Target Sequence 
AAGTGGCTGACGTGGACTGTCTGACATGCAGGCCTCCTCCCCACGCTGACTCAGCCGCCACGTTGGATAAAACCGGGTCA
AAACCACCGAGGAACCTAAAATGAACGGTACCTAAAATGAACGGTTTTGTGGTTGGGGGTGATTTTGTAACCCGATTACA
AGTTGATGGACCTTCGGTGTACTTTTCCTAGGCTAACTAACTAGGCTTGTGTAGGGACAAGGCTTTGGCCCAAAAAAAAA
AGGAATAAGTTCACCGGAGGTCCCTCAACTTAACAGCGAGATTATTTTGAGATCCCTCAACTATAAAACTAGAAATGTTC
ACCCCTAAACTCACTCAAACCGTTCACTGGAGGTCCCATGGTAGTATTTGCTCCCGGTTTTGCTGACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57385.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis