Browse Element(s) Details


Os.12064.1.S1_at

Description gb:AK063322.1
DB_XREF= gi:32973340
TID=Os.12064.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12064 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-H03, full insert sequence.
FL= gb:AK063322.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0508011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05050Os.7801.1.S1_at11/1112+2214870..2218478Stem-specific protein TSJT1, putative, expressed
LOC_Os12g05060Os.57385.1.S1_at11/1112+2226382..2227895expressed protein
LOC_Os12g05070OsAffx.19501.1.S1_x_at11/1112+2228140..2228805expressed protein
LOC_Os12g05070OsAffx.19501.1.S1_at11/1112+2228140..2228805expressed protein
LOC_Os12g05080Os.12064.1.S1_at11/1112+2230443..2233876expressed protein
LOC_Os12g05090Os.52139.1.S1_at11/1112+2235082..2238401peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os12g05100OsAffx.19502.1.S1_at10/1112+2240328..2243608hypothetical protein
LOC_Os12g05110Os.28109.1.S1_at11/1112+2244334..2248822pyruvate kinase family protein, expressed
LOC_Os12g05110Os.18503.1.S1_at1/1112+2244334..2248822pyruvate kinase family protein, expressed
LOC_Os12g05120Os.26353.1.S2_a_at11/1112+2250186..2253075Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12064.1.S1_at--844--4971Chr12:2233305..2233329 (25 bp)
GCATCTCATCACAGGCAGGATTGCA
LOC_Os12g05080
Os.12064.1.S1_at--69--9191Chr12:2233342..2233366 (25 bp)
TGCCTGGTGTCCCTGATGCATGGAA
LOC_Os12g05080
Os.12064.1.S1_at--824--8611Chr12:2233402..2233426 (25 bp)
TGGTGATGCCCCACAATGTTTCAAG
LOC_Os12g05080
Os.12064.1.S1_at--990--8031Chr12:2233469..2233493 (25 bp)
GGAGTACTGCTGGATGGCCATGTCC
LOC_Os12g05080
Os.12064.1.S1_at--1140--4331Chr12:2233486..2233510 (25 bp)
CCATGTCCTCTCTTACTGAAGCAAA
LOC_Os12g05080
Os.12064.1.S1_at--596--4731Chr12:2233612..2233636 (25 bp)
GCTGTGATTTTCAATTGCGGAGGTT
LOC_Os12g05080
Os.12064.1.S1_at--719--5511Chr12:2233690..2233714 (25 bp)
GAAAATCATTGCAACCTCTACATCC
LOC_Os12g05080
Os.12064.1.S1_at--606--2091Chr12:2233709..2233733 (25 bp)
ACATCCAAGTGTATATCCGGTCATG
LOC_Os12g05080
Os.12064.1.S1_at--1097--551Chr12:2233723..2233747 (25 bp)
ATCCGGTCATGGTAACAATAGCTTA
LOC_Os12g05080
Os.12064.1.S1_at--898--1531Chr12:2233742..2233766 (25 bp)
AGCTTAGCCTGTATTATGACGGTGA
LOC_Os12g05080
Os.12064.1.S1_at--796--5751Chr12:2233759..2233783 (25 bp)
GACGGTGATTTGTGTGTTTCATACA
LOC_Os12g05080
Target Sequence 
GCATCTCATCACAGGCAGGATTGCAGCCACTGGTGCCTGCCTGGTGTCCCTGATGCATGGAATGAACTCCTCTATGCCNT
TGTTCTTGAGAAGAAAGATGGTGATGCCCCACAATGTTTCAAGTGTGGGAGCTAAAAGACTCAACACTGGGTGATAAAAG
CCAAAGGAGTACTGCTGGATGGCCATGTCCTCTCTTACTGAAGCAAAGCTTTCATAACTCATAAGCTAGGTAGCTGAGCT
GGGGAGGACACATTTTTGGTAGTACATTAGTACAGTTTGGTTGGCAAGAAGTTAAGCTGCACNACTGTGCTGTGATTTTC
AATTGCGGAGGTTAGCGAAAAGAGCTGGGCAAAGGTAACAGTAGCTCTTTTTTTTTTTTCCGATAGTGAAAATCATTGCA
ACCTCTACATCCAAGTGTATATCCGGTCATGGTAACAATAGCTTAGCCTGTATTATGACGGTGATTTGTGTGTTTCATAC
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12064.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis