Browse Element(s) Details


Os.7831.1.S1_at

Description gb:AK070214.1
DB_XREF= gi:32980238
TID=Os.7831.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7831 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023045L17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023045L17, full insert sequence.
FL= gb:AK070214.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g119808/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11960Os.16735.1.S1_at1/116+6368183..63696952,3-bisphosphoglycerate-dependent phosphoglycerate mutase, putative
LOC_Os06g11970Os.49822.1.S1_at11/116+6371354..6375375SRF-type transcription factor family protein, expressed
LOC_Os06g11980Os.7831.1.S1_at8/116+6394404..6396222expressed protein
LOC_Os06g11990Os.7521.1.S1_at11/116+6400423..6406786Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os06g11990OsAffx.15379.2.S1_x_at9/116+6400423..6406786Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os06g11990Os.7149.1.S1_at1/116+6400423..6406786Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os06g11990OsAffx.15379.2.S1_at1/116+6400423..6406786Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os06g11990Os.33974.1.S1_at1/116+6400423..6406786Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os06g12000OsAffx.27576.1.S1_at9/116+6418603..6419379hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7831.1.S1_at--621--4191Chr06:6395842..6395863 (22 bp)
CCGCGACACCTTCATTTACATGGGT
LOC_Os06g11980
Os.7831.1.S1_at--269--191NONE
ATTTACATGGGTGAAGTGGCCTTCT
NONE
Os.7831.1.S1_at--945--5311Chr06:6394835..6394859 (25 bp)
GAAGTGGCCTTCTGCAGCCATGAGT
LOC_Os06g11980
Os.7831.1.S1_at--1117--3931Chr06:6394746..6394770 (25 bp)
CGGCGGCTCTGACAAGTCCGGCAAC
LOC_Os06g11980
Os.7831.1.S1_at--89--3711Chr06:6394701..6394725 (25 bp)
CTAGCATCGCCGGAGTAGGGAAAAA
LOC_Os06g11980
Os.7831.1.S1_at--147--1411Chr06:6394658..6394682 (25 bp)
AGAAATTTTGGCATCCTTACAGGAA
LOC_Os06g11980
Os.7831.1.S1_at--641--3891Chr06:6394605..6394629 (25 bp)
CTGTGTATATTGGTGGCTCAGGATA
LOC_Os06g11980
Os.7831.1.S1_at--159--10851NONE
TTGGGCTAGCTAAAGGTTTTCGGAT
NONE
Os.7831.1.S1_at--1132--2891NONE
AAGGTTTTCGGATTGCAATGCATCT
NONE
Os.7831.1.S1_at--645--2051Chr06:6394446..6394470 (25 bp)
ACTTAAGTTCTCCAGATTGTTGGAA
LOC_Os06g11980
Os.7831.1.S1_at--733--6611Chr06:6394428..6394452 (25 bp)
GTTGGAAAATGTGCACCACCCTTCT
LOC_Os06g11980
Target Sequence 
CCGCGACACCTTCATTTACATGGGTGAAGTGGCCTTCTGCAGCCATGAGTGCAGGCAACAGCAGATGAACCTGGATGAGC
TCAACGAGAAGAAATGCTTCCAGCGGGAAGGCGGCGGCGGCTCTGACAAGTCCGGCAACAGCGGCGCCGTAGCCGCCGCC
TAGCATCGCCGGAGTAGGGAAAAAANNANNAAAAAAAAATGGAGAAATTTTGGCATCCTTACAGGAAACCAAATATATCT
ATATATGTGGTGTAACTGTGTATATTGGTGGCTCAGGATAATTATGAGCCAAAGGGGGAGGGAATTATGTAGAGATTGGA
ATTGGGCTAGCTAAAGGTTTTCGGATTGCAATGCATCTGGAGCAAGATTAGGCCGTGGGATTTGGAGCTGTTTTGAGAAC
TTTATGAAGGATGAACTTAAGTTCTCCAGATTGTTGGAAAATGTGCACCACCCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7831.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis