Browse Element(s) Details


Os.7836.1.S1_s_at

Description gb:AK101836.1
DB_XREF= gi:32987045
TID=Os.7836.1
CNT=103
FEA=FLmRNA
TIER=FL+Stack
STK=43
UG=Os.7836 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033069C18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033069C18, full insert sequence.
FL= gb:AK101836.1 gb:AK065784.1 gb:AK119551.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4911010/11Delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49060Os.54378.1.S1_at11/116+29732807..29736190ternary complex factor MIP1, putative, expressed
LOC_Os06g49070OsAffx.15991.1.S1_at11/116+29736486..29737309expressed protein
LOC_Os06g49080Os.54886.1.S1_at11/116+29737882..29741501Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g49090Os.8048.1.S1_at11/116+29743318..29749634transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g49090Os.54886.1.S1_at2/116+29743318..29749634transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g49100OsAffx.28180.1.S1_s_at11/116+29753547..29755379leucine-rich repeat family protein, putative, expressed
LOC_Os06g49100Os.54530.1.S1_x_at11/116+29753547..29755379leucine-rich repeat family protein, putative, expressed
LOC_Os06g49100Os.54530.1.S1_at11/116+29753547..29755379leucine-rich repeat family protein, putative, expressed
LOC_Os06g49110OsAffx.15992.1.S1_at11/116+29756047..29760821Delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed
LOC_Os06g49110Os.7836.1.S1_s_at10/116+29756047..29760821Delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed
LOC_Os06g49120Os.26393.1.S1_at11/116+29761521..29765747NmrA-like family protein, expressed
LOC_Os06g49120OsAffx.15993.1.S1_at11/116+29761521..29765747NmrA-like family protein, expressed
LOC_Os06g49130OsAffx.28181.1.S1_at11/116+29766908..29779666TAZ zinc finger family protein, expressed
LOC_Os06g49140Os.7573.1.S1_at11/116+29781086..29783933Ribosomal RNA methyltransferase 1, putative, expressed
LOC_Os06g49150OsAffx.5151.1.S1_at11/116+29785582..29787682Exostosin-3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006779biological_processporphyrin biosynthesis
GO:0004655molecular_functionporphobilinogen synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7836.1.S1_s_at--1097--3651Chr06:29757929..29757952 (24 bp)
CTTACCAGATGAACCCAGCTAACTA
LOC_Os06g49110
Os.7836.1.S1_s_at--757--5411Chr06:29757900..29757924 (25 bp)
GAAGCGCTTCTAGAAACTGCTGCAG
LOC_Os06g49110
Os.7836.1.S1_s_at--403--5891Chr06:29757867..29757887 (21 bp)
GAGCTGATATTCTTCTGGTAAAACC
LOC_Os06g49110
Os.7836.1.S1_s_at--439--6591Chr06:29757748..29757772 (25 bp)
GATTGCCATACTTGGATGTCATCCG
LOC_Os06g49110
Os.7836.1.S1_s_at--1151--751Chr06:29757733..29757757 (25 bp)
ATGTCATCCGTCTTCTTAGGGACAA
LOC_Os06g49110
Os.7836.1.S1_s_at--551--8151Chr06:29757714..29757738 (25 bp)
GGACAATTCAGCATTGCCAATCGCT
LOC_Os06g49110
Os.7836.1.S1_s_at--333--3051NONE
AATCGCTGCATATCAGGTCTCTGGA
NONE
Os.7836.1.S1_s_at--928--8051Chr06:29756927..29756951 (25 bp)
GGAGAGTACTCCATGATCAAAGCTG
LOC_Os06g49110
Os.7836.1.S1_s_at--885--8951Chr06:29756829..29756853 (25 bp)
TGACATCATCCTGACGTATTTCGCG
LOC_Os06g49110
Os.7836.1.S1_s_at--845--8951Chr06:29756710..29756734 (25 bp)
TGAAACTTTTGCATGTCCCCAGGTC
LOC_Os06g49110
Os.7836.1.S1_s_at--102--8891Chr06:29756676..29756700 (25 bp)
TGAGGCTCGTTTTGCACTCTATAGA
LOC_Os06g49110
Target Sequence 
CTTACCAGATGAACCCAGCTAACTACAGAGAAGCGCTTCTAGAAACTGCTGCAGATGAGGCAGAAGGAGCTGATATTCTT
CTGGTAAAACCTGGATTGCCATACTTGGATGTCATCCGTCTTCTTAGGGACAATTCAGCATTGCCAATCGCTGCATATCA
GGTCTCTGGAGAGTACTCCATGATCAAAGCTGGAGGAGCACTGAACATGATCGACGAAGAGAAGGTGATGATGGAGTCGC
TCATGTGCCTGAGGCGAGCCGGCGCTGACATCATCCTGACGTATTTCGCGCGTCAGGCCGCCAACGTGCTGTGCGGCATG
CGATCCAACTAGCAGGTCAACTCTGAATCTGAAAAAAGCTGAGCAGCTAAAACCCAGCCATCTCTGAAACTTTTGCATGT
CCCCAGGTCATCATCATGTGAGGCTCGTTTTGCACTCTATAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7836.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis