Browse Element(s) Details


Os.7844.1.S1_at

Description gb:AK102956.1
DB_XREF= gi:32988165
TID=Os.7844.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7844 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033115G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033115G09, full insert sequence.
FL= gb:AK062243.1 gb:AK102956.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3018011/11UBA/TS-N domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30140Os.16171.1.A1_at11/112+17899269..17903289expressed protein
LOC_Os02g30150OsAffx.2801.1.S1_at11/112+17904762..17909604NB-ARC domain containing protein, expressed
LOC_Os02g30150Os.15982.1.S1_s_at11/112+17904762..17909604NB-ARC domain containing protein, expressed
LOC_Os02g30160OsAffx.25952.1.S1_s_at2/112+17912237..17919538retrotransposon protein, putative, unclassified
LOC_Os02g30170OsAffx.2802.1.S1_at10/112+17922280..17923328hypothetical protein
LOC_Os02g30180Os.7844.1.S1_at11/112+17924881..17930544UBA/TS-N domain containing protein, expressed
LOC_Os02g30190OsAffx.2803.1.S1_at11/112+17942427..17945072hypothetical protein
LOC_Os02g30200Os.52877.1.S1_x_at10/112+17946161..17951487expressed protein
LOC_Os02g30200OsAffx.12286.1.S1_x_at10/112+17946161..17951487expressed protein
LOC_Os02g30200OsAffx.12286.1.S1_at10/112+17946161..17951487expressed protein
LOC_Os02g30200Os.52877.1.S1_at10/112+17946161..17951487expressed protein
LOC_Os02g30200Os.6862.2.A1_at1/112+17946161..17951487expressed protein
LOC_Os02g30210Os.28039.1.S1_at11/112+17952646..17955834beta scruin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7844.1.S1_at--932--5351Chr02:17929701..17929725 (25 bp)
GAAGAGGGCTTTTCAAACACTCCTT
LOC_Os02g30180
Os.7844.1.S1_at--615--2471Chr02:17929716..17929740 (25 bp)
AACACTCCTTACCTACATTGGCAAT
LOC_Os02g30180
Os.7844.1.S1_at--152--291Chr02:17929929..17929953 (25 bp)
ATAGAGTTTCTCCAGCTCTGTGGAT
LOC_Os02g30180
Os.7844.1.S1_at--635--3211Chr02:17929997..17930021 (25 bp)
CAAGGTTGACAAGGCCGTCCTGAAC
LOC_Os02g30180
Os.7844.1.S1_at--656--8971Chr02:17930017..17930041 (25 bp)
TGAACACTGCTGGAGCCGAGCTGAA
LOC_Os02g30180
Os.7844.1.S1_at--1068--4491Chr02:17930031..17930055 (25 bp)
GCCGAGCTGAATTCTGCTATCACTA
LOC_Os02g30180
Os.7844.1.S1_at--245--9691Chr02:17930050..17930074 (25 bp)
TCACTAATCCTTTCTTTGGAGTCCT
LOC_Os02g30180
Os.7844.1.S1_at--692--751Chr02:17930095..17930119 (25 bp)
ATGTACACTTGAACCTCTCTGTTTC
LOC_Os02g30180
Os.7844.1.S1_at--938--3772Chr11:10351661..10351688 (25 bp)
CTCTGTTTCACCTTTGCTTGAAGCA
NONE
Os.7844.1.S1_at--629--5271Chr02:17930164..17930188 (25 bp)
GAATGATCTTTCACTGCGCTCACTT
LOC_Os02g30180
Os.7844.1.S1_at--853--10591Chr02:17930187..17930211 (25 bp)
TTCTGGTCGCCAGATTGCACGAGAT
LOC_Os02g30180
Target Sequence 
GAAGAGGGCTTTTCAAACACTCCTTACCTACATTGGCAATGTAGCTAAAAATCCTGACGAGGAGAAATTCAGGAAGATCA
GACTGNCCAACGCTACATTTCAGGAGAGGGTTGGCAATCTGCATGGAGGCATAGAGTTTCTCCAGCTCTGTGGATTTGAG
AAACTTGAAGGCAACGAGTTCTTGTTCTTGGCAAGGGACAAGGTTGACAAGGCCGTCCTGAACACTGCTGGAGCCGAGCT
GAATTCTGCTATCACTAATCCTTTCTTTGGAGTCCTTTAAATCGTATAGAATTTCCATGTACACTTGAACCTCTCTGTTT
CACCTTTGCTTGAAGCACAAATGCACAGAAATATTGATATTGAGCGAATGATCTTTCACTGCGCTCACTTCTGGTCGCCA
GATTGCACGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7844.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis