Browse Element(s) Details


Os.7850.1.S1_at

Description gb:AK120284.1
DB_XREF= gi:37989907
TID=Os.7850.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7850 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-045-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013049N05, full insert sequence.
FL= gb:AK120284.1 gb:AK062126.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4255011/11Dirigent-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42500Os.14745.1.S1_at11/1111+25092754..25093519Dirigent-like protein, expressed
LOC_Os11g42510Os.15671.1.A2_at11/1111+25095086..25102134tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os11g42510Os.38669.1.A1_s_at11/1111+25095086..25102134tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os11g42520OsAffx.31442.1.S1_at11/1111+25104891..25107597hypothetical protein
LOC_Os11g42530OsAffx.7388.1.S1_at10/1111+25112028..25112839hypothetical protein
LOC_Os11g42540Os.26771.1.A1_at11/1111+25113151..25116027oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os11g42550Os.7850.1.S1_at11/1111+25116419..25117263Dirigent-like protein, expressed
LOC_Os11g42570OsAffx.31443.1.S1_at11/1111+25119412..25120366hypothetical protein
LOC_Os11g42580OsAffx.19340.1.S1_at11/1111+25125503..25129837NB-ARC domain containing protein
LOC_Os11g42590OsAffx.19340.2.S1_at11/1111+25131811..25137577NB-ARC domain containing protein
LOC_Os11g42590OsAffx.19340.3.S1_at3/1111+25131811..25137577NB-ARC domain containing protein
LOC_Os11g42600OsAffx.135.1.S1_at2/1111+25138883..25142079transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7850.1.S1_at--626--8311Chr11:25116881..25116905 (25 bp)
GGCTACGTCCTCTGGAAGACGGTCA
LOC_Os11g42550
Os.7850.1.S1_at--189--5771Chr11:25116938..25116962 (25 bp)
GACGTCTACGTCAACCCCTGAGATC
LOC_Os11g42550
Os.7850.1.S1_at--537--3991Chr11:25116984..25117008 (25 bp)
CGTGTGCTTGCTTCCGGCGTACGTG
LOC_Os11g42550
Os.7850.1.S1_at--821--4991Chr11:25117015..25117039 (25 bp)
GCATGACGTGGCGTGTGCCAGCACA
LOC_Os11g42550
Os.7850.1.S1_at--48--7471Chr11:25117027..25117051 (25 bp)
GTGTGCCAGCACACGACACATGTCG
LOC_Os11g42550
Os.7850.1.S1_at--761--2171Chr11:25117042..25117066 (25 bp)
ACACATGTCGCAGCTGCCACGGATG
LOC_Os11g42550
Os.7850.1.S1_at--258--7991Chr11:25117062..25117086 (25 bp)
GGATGCTACACTACCTTACACTATA
LOC_Os11g42550
Os.7850.1.S1_at--95--9211Chr11:25117107..25117131 (25 bp)
TGCCACCCAGCCAGTGACGAATAAT
LOC_Os11g42550
Os.7850.1.S1_at--198--8151Chr11:25117134..25117158 (25 bp)
GGACAAGTCCATTCCATGTGTTGTT
LOC_Os11g42550
Os.7850.1.S1_at--1--8771Chr11:25117155..25117179 (25 bp)
TGTTAGTTGTTACCGTGGCGTGTAA
LOC_Os11g42550
Os.7850.1.S1_at--1156--7071Chr11:25117195..25117219 (25 bp)
GTCAATTATCAACTTCCATTCCAGA
LOC_Os11g42550
Target Sequence 
GGCTACGTCCTCTGGAAGACGGTCAGCCTCGACCACCCCAACGCCATCCTCGAGCTCGACGTCTACGTCAACCCCTGAGA
TCGCCGCCGCCGCCGCCGGCCACCGTGTGCTTGCTTCCGGCGTACGTGGTGGTGGCATGACGTGGCGTGTGCCAGCACAC
GACACATGTCGCAGCTGCCACGGATGCTACACTACCTTACACTATACTACTATACTATACTAGTACTGCCACCCAGCCAG
TGACGAATAATATGGACAAGTCCATTCCATGTGTTGTTAGTTGTTACCGTGGCGTGTAATAATTCATGAGATTTGTCAAT
TATCAACTTCCATTCCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7850.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis