Browse Element(s) Details


Os.7852.2.S1_at

Description gb:NM_185919.1
DB_XREF= gi:34898923
GEN=P0503D09.32
TID=Os.7852.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.7852 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU091644(C1340),D22794(C1340)~unknown protein (P0503D09.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) contains ESTs AU091644(C1340),D22794(C1340)~unknown protein (P0503D09.32), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g453205/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45280Os.35897.2.S1_x_at11/117+27012499..27017309Mo25 protein, putative, expressed
LOC_Os07g45280Os.35897.1.A1_at11/117+27012499..27017309Mo25 protein, putative, expressed
LOC_Os07g45290OsAffx.22543.1.S1_at11/117+27017550..27021823Cytochrome P450 family protein, expressed
LOC_Os07g45290OsAffx.22543.1.S1_x_at11/117+27017550..27021823Cytochrome P450 family protein, expressed
LOC_Os07g45300OsAffx.10304.1.S1_s_at11/117+27027894..27033398Tim44-like domain containing protein, expressed
LOC_Os07g45300OsAffx.10304.2.S1_at10/117+27027894..27033398Tim44-like domain containing protein, expressed
LOC_Os07g45310Os.17884.1.S1_at11/117+27035300..27036972BSD domain containing protein, expressed
LOC_Os07g45320Os.7852.2.S1_s_at11/117+27038510..27039940expressed protein
LOC_Os07g45320OsAffx.28914.1.S1_at10/117+27038510..27039940expressed protein
LOC_Os07g45320Os.7852.2.S1_at5/117+27038510..27039940expressed protein
LOC_Os07g45330Os.31460.1.S1_at11/117+27042532..27044452expressed protein
LOC_Os07g45330Os.55007.1.S1_x_at7/117+27042532..27044452expressed protein
LOC_Os07g45340OsAffx.28915.1.S1_at11/117+27047094..27048398hypothetical protein
LOC_Os07g45350Os.5183.2.S1_at11/117+27049024..27053091expressed protein
LOC_Os07g45350Os.5183.1.S1_x_at11/117+27049024..27053091expressed protein
LOC_Os07g45360Os.11258.1.S1_at11/117+27053648..27057948Type III restriction enzyme, res subunit family protein, expressed
LOC_Os07g45360Os.11258.1.S2_at10/117+27053648..27057948Type III restriction enzyme, res subunit family protein, expressed
LOC_Os07g45370Os.28679.1.S1_at10/117+27056913..27060589expressed protein
LOC_Os07g45390Os.32101.2.S1_at11/117+27062213..27065707hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7852.2.S1_at--132--6731Chr07:27037234..27037258 (25 bp)
GTTCTGAATTCTGTGTTCTTGCTTC
NONE
Os.7852.2.S1_at--694--3851Chr07:27037237..27037261 (25 bp)
CTGAATTCTGTGTTCTTGCTTCTTT
NONE
Os.7852.2.S1_at--425--10511NONE
TTCACAACTTAGACTGGTCAACCAT
NONE
Os.7852.2.S1_at--1159--2491NONE
AACTTAGACTGGTCAACCATCTCTT
NONE
Os.7852.2.S1_at--961--9651Chr07:27038395..27038647 (25 bp)
TCAGCCGTCGAGGATCCAGCTGATG
NONE
Os.7852.2.S1_at--541--10311Chr07:27038663..27038687 (25 bp)
TTTCGTGTCTTGACGTGAACTCTTT
LOC_Os07g45320
Os.7852.2.S1_at--1063--7431Chr07:27038667..27038691 (25 bp)
GTGTCTTGACGTGAACTCTTTGCTC
LOC_Os07g45320
Os.7852.2.S1_at--1109--8971Chr07:27038678..27038702 (25 bp)
TGAACTCTTTGCTCGGCCGCGCTTT
LOC_Os07g45320
Os.7852.2.S1_at--280--4811Chr07:27038688..27038712 (25 bp)
GCTCGGCCGCGCTTTAGGGATGATA
LOC_Os07g45320
Os.7852.2.S1_at--245--9451Chr07:27038690..27038714 (25 bp)
TCGGCCGCGCTTTAGGGATGATATG
LOC_Os07g45320
Os.7852.2.S1_at--87--7651NONE
GGGATGATATGGATGACAGAGGCAC
NONE
Target Sequence 
GTTCTGAATTCTGTGTTCTTGCTTCTTTCACAACTTAGACTGGTCAACCATCTCTTCGCAGATCCACCTGCTCCGCCGCC
GCCGCCGCCGCCGGCCTCCTCCGACCCGCGCGTCTCAGCCGTCGAGGATCCAGCTGATGCGGGATGCGCCCAAGTTTCGT
GTCTTGACGTGAACTCTTTGCTCGGCCGCGCTTTAGGGATGATATGGATGACAGAGGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7852.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis