Browse Element(s) Details


Os.7862.1.S1_at

Description gb:AK111568.1
DB_XREF= gi:37988231
TID=Os.7862.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.7862 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-044-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013072L11, full insert sequence.
FL= gb:AK111568.1 gb:AK098994.1 gb:AK104874.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1384011/11Senescence-associated protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13790Os.14693.1.S2_at11/113+7448669..7454495myb family transcription factor, putative, expressed
LOC_Os03g13790Os.14693.1.S1_at11/113+7448669..7454495myb family transcription factor, putative, expressed
LOC_Os03g13800Os.12755.2.S1_s_at10/113+7455335..7457261NHP2-like protein 1, putative, expressed
LOC_Os03g13810Os.13497.1.S2_at11/113+7459432..7462341expressed protein
LOC_Os03g13810Os.13497.1.S1_at11/113+7459432..7462341expressed protein
LOC_Os03g13820Os.10079.1.S1_at11/113+7462397..7466601protein kinase family protein, putative, expressed
LOC_Os03g13830OsAffx.3232.1.S1_at11/113+7475103..7478415pentatricopeptide, putative, expressed
LOC_Os03g13830OsAffx.11634.2.S1_x_at1/113+7475103..7478415pentatricopeptide, putative, expressed
LOC_Os03g13830OsAffx.11634.1.S1_x_at1/113+7475103..7478415pentatricopeptide, putative, expressed
LOC_Os03g13840Os.7862.1.S1_at11/113+7479210..7482984Senescence-associated protein, expressed
LOC_Os03g13850OsAffx.12847.1.S1_s_at11/113+7485066..7491913Cell cycle checkpoint protein RAD17, putative
LOC_Os03g13860Os.17582.1.S1_at11/113+7493275..7496596GTP-binding protein, putative, expressed
LOC_Os03g13870Os.10099.1.S1_at11/113+7498807..7500531expressed protein
LOC_Os03g13880Os.34131.1.S1_s_at8/113+7506727..7508862hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0009414biological_processresponse to water deprivation
GO:0009644biological_processresponse to high light intensity
GO:0009651biological_processresponse to salt stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7862.1.S1_at--790--1211Chr03:7480749..7480773 (25 bp)
AGTTATTCTTGCTTCACTCGATGGA
LOC_Os03g13840
Os.7862.1.S1_at--1161--591Chr03:7480308..7480332 (25 bp)
ATGCGAACGTCGTCGGTTGTGACAA
LOC_Os03g13840
Os.7862.1.S1_at--1059--991Chr03:7479622..7479646 (25 bp)
AGGATTACCTTCACGCCTCTGGAAA
LOC_Os03g13840
Os.7862.1.S1_at--843--9431Chr03:7479605..7479629 (25 bp)
TCTGGAAACGCTCTTGGAGTCGCAT
LOC_Os03g13840
Os.7862.1.S1_at--794--1131Chr03:7479588..7479612 (25 bp)
AGTCGCATGGGCTGTCTTCAAAATT
LOC_Os03g13840
Os.7862.1.S1_at--798--3131Chr03:7479567..7479591 (25 bp)
AATTCGGAAAGCTCTCGACCCAAAG
LOC_Os03g13840
Os.7862.1.S1_at--983--5371Chr03:7479534..7479558 (25 bp)
GAAGAAGTCGTCTCTGGCGAGCGCT
LOC_Os03g13840
Os.7862.1.S1_at--692--4771Chr03:7479512..7479536 (25 bp)
GCTGCTGCCCATGCTGTAGCTAAAG
LOC_Os03g13840
Os.7862.1.S1_at--1122--8511Chr03:7479441..7479465 (25 bp)
TGGAACTCGCTGTTACTCTCTAATA
LOC_Os03g13840
Os.7862.1.S1_at--96--3011Chr03:7479395..7479419 (25 bp)
AATGCTCTTTTGTGAACTTGGCGGC
LOC_Os03g13840
Os.7862.1.S1_at--875--8551Chr03:7479355..7479379 (25 bp)
TGGATGTGTCGCTTGTAACTTGTAA
LOC_Os03g13840
Target Sequence 
AGTTATTCTTGCTTCACTCGATGGATTTGGGAAAGTATGGGATGCTGTAGAGGTGTCTGGAAAGAACGTGATGCGAACGT
CGTCGGTTGTGACAACTTCTGTTGTAACACATAGATACGGAGATCAAGCTGGACAGGTCACACAGGATTACCTTCACGCC
TCTGGAAACGCTCTTGGAGTCGCATGGGCTGTCTTCAAAATTCGGAAAGCTCTCGACCCAAAGGGCAATCTGAAGAAGTC
GTCTCTGGCGAGCGCTGCTGCCCATGCTGTAGCTAAAGAATCGATATCTCGGCAAAGAAGGAAGTGAGACAACACGGTCG
ATGGTGGAACTCGCTGTTACTCTCTAATACGGTGTACTAGCTTCAATAGAAATGCTCTTTTGTGAACTTGGCGGCTATAG
CAGATTTTGTTGGATGTGTCGCTTGTAACTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7862.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis