Browse Element(s) Details


Os.13497.1.S1_at

Description gb:AK072703.1
DB_XREF= gi:32982726
TID=Os.13497.1
CNT=32
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.13497 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023135J11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023135J11, full insert sequence.
FL= gb:AK072703.1 gb:AK058297.1 gb:AK062662.1 gb:AK064767.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1381011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13770Os.27347.1.S1_a_at11/113+7432674..7436825expressed protein
LOC_Os03g13780Os.35344.18.S1_x_at9/113+7437731..7443905transposon protein, putative, Mutator sub-class
LOC_Os03g13780Os.35344.3.S1_x_at9/113+7437731..7443905transposon protein, putative, Mutator sub-class
LOC_Os03g13780OsAffx.22940.5.S1_x_at3/113+7437731..7443905transposon protein, putative, Mutator sub-class
LOC_Os03g13790Os.14693.1.S2_at11/113+7448669..7454495myb family transcription factor, putative, expressed
LOC_Os03g13790Os.14693.1.S1_at11/113+7448669..7454495myb family transcription factor, putative, expressed
LOC_Os03g13800Os.12755.2.S1_s_at10/113+7455335..7457261NHP2-like protein 1, putative, expressed
LOC_Os03g13810Os.13497.1.S2_at11/113+7459432..7462341expressed protein
LOC_Os03g13810Os.13497.1.S1_at11/113+7459432..7462341expressed protein
LOC_Os03g13820Os.10079.1.S1_at11/113+7462397..7466601protein kinase family protein, putative, expressed
LOC_Os03g13830OsAffx.3232.1.S1_at11/113+7475103..7478415pentatricopeptide, putative, expressed
LOC_Os03g13830OsAffx.11634.2.S1_x_at1/113+7475103..7478415pentatricopeptide, putative, expressed
LOC_Os03g13830OsAffx.11634.1.S1_x_at1/113+7475103..7478415pentatricopeptide, putative, expressed
LOC_Os03g13840Os.7862.1.S1_at11/113+7479210..7482984Senescence-associated protein, expressed
LOC_Os03g13850OsAffx.12847.1.S1_s_at11/113+7485066..7491913Cell cycle checkpoint protein RAD17, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13497.1.S1_at--894--3851Chr03:7459971..7459995 (25 bp)
CTGACCTTCGGTTTGCTAATTTTGG
LOC_Os03g13810
Os.13497.1.S1_at--792--10191Chr03:7460072..7460096 (25 bp)
TATATATTGTTGTGCTCCCAGACGA
LOC_Os03g13810
Os.13497.1.S1_at--59--10831Chr03:7460081..7460105 (25 bp)
TTGTGCTCCCAGACGATGGTTGCAA
LOC_Os03g13810
Os.13497.1.S1_at--32--8171Chr03:7460163..7460187 (25 bp)
GGAAACAGCACATTTTGCCGTAGTA
LOC_Os03g13810
Os.13497.1.S1_at--535--211Chr03:7460189..7460213 (25 bp)
ATTTGAATCCATGTTGCTGTCTCGT
LOC_Os03g13810
Os.13497.1.S1_at--345--9131Chr03:7460203..7460227 (25 bp)
TGCTGTCTCGTTATTGGTGTGTTAC
LOC_Os03g13810
Os.13497.1.S1_at--1073--7051Chr03:7460230..7460254 (25 bp)
GTAACCTGTGTGTTGTTATCTCCGC
LOC_Os03g13810
Os.13497.1.S1_at--568--6551Chr03:7460263..7460287 (25 bp)
GATTCCAAGTAATCCAGTGCCTTCA
LOC_Os03g13810
Os.13497.1.S1_at--897--7271Chr03:7460279..7460303 (25 bp)
GTGCCTTCATGACCTGCAAATTCTA
LOC_Os03g13810
Os.13497.1.S1_at--509--7871Chr03:7460455..7460479 (25 bp)
GGTTTAGTTATTCTCTGTTGCCAAG
LOC_Os03g13810
Os.13497.1.S1_at--1140--6751Chr03:7460502..7460526 (25 bp)
GTTACAGTTCTGTGACTAACCATGT
LOC_Os03g13810
Target Sequence 
CTGACCTTCGGTTTGCTAATTTTGGTTGTGCCNGTTGAATCTGAAATAACCAGAATAGTCATGGGGAAAAAAGTCTGATC
TGGAAGGTTCGAATTACATTTCTATATATTGTTGTGCTCCCAGACGATGGTTGCAAGAAATNACTCATGCTGGATAAAAT
TGTGGATGTAAGAGTCTGCAGTNGTTAAAATCTGGAAACAGCACATTTTGCCGTAGTAAATTTGAATCCATGTTGCTGTC
TCGTTATTGGTGTGTTACGAGTAACCTGTGTGTTGTTATCTCCGCTTGGACTAGATTCCAAGTAATCCAGTGCCTTCATG
ACCTGCAAATTCTATGCCTATGAAGTAACATGAACAGTTTGTATGTATGTATTCTGTTGATGCATACTTGCATTATTTGT
GAGATGTACATGTTGTGGTAAAATTTTGCATTCACCATATAGAAATAGTAANTGACTATCCTTGTTTAGTTCGAAAACTA
CTGCAGGTTTAGTTATTCTCTGTTGCCAAGAGTGCTTGTTATGATTGTAAGGGTTACAGTTCTGTGACTAACCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13497.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis