Browse Element(s) Details


OsAffx.3232.1.S1_at

Description tigr:9631.m01318
TID=OsAffx.3232.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1383011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13790Os.14693.1.S2_at11/113+7448669..7454495myb family transcription factor, putative, expressed
LOC_Os03g13790Os.14693.1.S1_at11/113+7448669..7454495myb family transcription factor, putative, expressed
LOC_Os03g13800Os.12755.2.S1_s_at10/113+7455335..7457261NHP2-like protein 1, putative, expressed
LOC_Os03g13810Os.13497.1.S2_at11/113+7459432..7462341expressed protein
LOC_Os03g13810Os.13497.1.S1_at11/113+7459432..7462341expressed protein
LOC_Os03g13820Os.10079.1.S1_at11/113+7462397..7466601protein kinase family protein, putative, expressed
LOC_Os03g13830OsAffx.3232.1.S1_at11/113+7475103..7478415pentatricopeptide, putative, expressed
LOC_Os03g13830OsAffx.11634.2.S1_x_at1/113+7475103..7478415pentatricopeptide, putative, expressed
LOC_Os03g13830OsAffx.11634.1.S1_x_at1/113+7475103..7478415pentatricopeptide, putative, expressed
LOC_Os03g13840Os.7862.1.S1_at11/113+7479210..7482984Senescence-associated protein, expressed
LOC_Os03g13850OsAffx.12847.1.S1_s_at11/113+7485066..7491913Cell cycle checkpoint protein RAD17, putative
LOC_Os03g13860Os.17582.1.S1_at11/113+7493275..7496596GTP-binding protein, putative, expressed
LOC_Os03g13870Os.10099.1.S1_at11/113+7498807..7500531expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3232.1.S1_at--516--3511Chr03:7476524..7476548 (25 bp)
CATGTAGTGATTGCCATCATGCTGC
LOC_Os03g13830
OsAffx.3232.1.S1_at--879--71Chr03:7476483..7476507 (25 bp)
ATTGCCGGTCGAGAGATTATACTTA
LOC_Os03g13830
OsAffx.3232.1.S1_at--1087--2491Chr03:7476245..7476269 (25 bp)
AACATCCATATGCAACTTCCGAGTC
LOC_Os03g13830
OsAffx.3232.1.S1_at--702--8171Chr03:7475857..7476162 (25 bp)
GGAACTTCTACAAGTAGCCTGCATC
LOC_Os03g13830
OsAffx.3232.1.S1_at--671--371Chr03:7475835..7475859 (25 bp)
ATCACAGATTCACAACATGGGTATT
LOC_Os03g13830
OsAffx.3232.1.S1_at--462--5451Chr03:7475789..7475813 (25 bp)
GAACGATCATTCTGGCGAACAAACT
LOC_Os03g13830
OsAffx.3232.1.S1_at--335--8671Chr03:7475470..7475494 (25 bp)
TGTGAACTCATCTTACTACGCATCT
LOC_Os03g13830
OsAffx.3232.1.S1_at--107--3731Chr03:7475455..7475479 (25 bp)
CTACGCATCTTTCATACTTTCACAA
LOC_Os03g13830
OsAffx.3232.1.S1_at--372--7751Chr03:7475281..7475305 (25 bp)
GGTGTTGATCATGCATTTTGGTCTG
LOC_Os03g13830
OsAffx.3232.1.S1_at--985--10851Chr03:7475206..7475288 (25 bp)
TTGGTCTGAGCTTTGACAGGGCAGT
LOC_Os03g13830
OsAffx.3232.1.S1_at--1143--8871Chr03:7475182..7475206 (25 bp)
TGAGGCACTTGGCACTTCACTTCAG
LOC_Os03g13830
Target Sequence 
CATGTAGTGATTGCCATCATGCTGCTAAGTTGATTTCAACAATTGCCGGTCGAGAGATTATACTTAAAGACGTTAATAGG
ATCCACTATATGAAATGCAACATCCATATGCAACTTCCGAGTCAAAAGGAAAGAAGACAAACAAGATCAACCAATCTGAG
AGACTGGTATAAAATTGCTCTAAGCAAAGATGAAATGTTGGAGGAGGAACTTCTACAAGTAGCCTGCATCACAGATTCAC
AACATGGGTATTACTTGGATAATCAACAGTGGAGAACGATCATTCTGGCGAACAAACTCAGGGTTATGGAAGGGAAAAAT
TATGTGAACTCATCTTACTACGCATCTTTCATACTTTCACAAATACAAGCAAATTTCCAGAAAGATATCTGTTTAATTCT
GGGGCATCAGCAGGGTGCAGTGGTGTTGATCATGCATTTTGGTCTGAGCTTTGACAGGGCAGTGAGGCACTTGGCACTTC
ACTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3232.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis