Browse Element(s) Details


Os.17582.1.S1_at

Description gb:AK071529.1
DB_XREF= gi:32981552
TID=Os.17582.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17582 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023104E16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023104E16, full insert sequence.
FL= gb:AK071529.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1386011/11GTP-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13830OsAffx.3232.1.S1_at11/113+7475103..7478415pentatricopeptide, putative, expressed
LOC_Os03g13830OsAffx.11634.2.S1_x_at1/113+7475103..7478415pentatricopeptide, putative, expressed
LOC_Os03g13830OsAffx.11634.1.S1_x_at1/113+7475103..7478415pentatricopeptide, putative, expressed
LOC_Os03g13840Os.7862.1.S1_at11/113+7479210..7482984Senescence-associated protein, expressed
LOC_Os03g13850OsAffx.12847.1.S1_s_at11/113+7485066..7491913Cell cycle checkpoint protein RAD17, putative
LOC_Os03g13860Os.17582.1.S1_at11/113+7493275..7496596GTP-binding protein, putative, expressed
LOC_Os03g13870Os.10099.1.S1_at11/113+7498807..7500531expressed protein
LOC_Os03g13880Os.34131.1.S1_s_at8/113+7506727..7508862hAT family dimerisation domain containing protein
LOC_Os03g13890Os.26886.2.S1_s_at10/113+7510572..7512887transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g13890Os.26886.6.S1_s_at9/113+7510572..7512887transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g13890OsAffx.16467.1.S1_at7/113+7510572..7512887transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g13890OsAffx.3425.1.S1_at1/113+7510572..7512887transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g13900NANA3+7514214..7520301retrotransposon protein, putative, unclassified
LOC_Os03g13910Os.28943.1.S1_x_at2/113+7521064..7524199retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17582.1.S1_at--141--6491Chr03:7495943..7495967 (25 bp)
GATAGCATCCTTCCTGTAGAGACTC
LOC_Os03g13860
Os.17582.1.S1_at--920--9831Chr03:7496183..7496207 (25 bp)
TAAACCCGCTGCCTGCACAGAGGAA
LOC_Os03g13860
Os.17582.1.S1_at--554--7231Chr03:7496289..7496313 (25 bp)
GTCGCTTCCTGATGTGAGCAGCAGT
LOC_Os03g13860
Os.17582.1.S1_at--1060--1151Chr03:7496342..7496366 (25 bp)
AGTACAGATTACACAGGCCACCACA
LOC_Os03g13860
Os.17582.1.S1_at--97--891Chr03:7496356..7496380 (25 bp)
AGGCCACCACAGTAGTACGTCGAAC
LOC_Os03g13860
Os.17582.1.S1_at--204--7651Chr03:7496389..7496413 (25 bp)
GGGAGCATATGCTGTGCCTTGACGT
LOC_Os03g13860
Os.17582.1.S1_at--575--8691Chr03:7496401..7496425 (25 bp)
TGTGCCTTGACGTTGGATTCCATAA
LOC_Os03g13860
Os.17582.1.S1_at--593--7931Chr03:7496415..7496439 (25 bp)
GGATTCCATAATACCTTGCTTGCAG
LOC_Os03g13860
Os.17582.1.S1_at--755--10691Chr03:7496430..7496454 (25 bp)
TTGCTTGCAGCACAGCGAAGGTACC
LOC_Os03g13860
Os.17582.1.S1_at--386--3091Chr03:7496456..7496480 (25 bp)
AATACTATTTGTCGTCACCCCTAAT
LOC_Os03g13860
Os.17582.1.S1_at--961--7071Chr03:7496469..7496493 (25 bp)
GTCACCCCTAATCTTTTATCTGATA
LOC_Os03g13860
Target Sequence 
GATAGCATCCTTCCTGTAGAGACTCTCAAAGACGAAGTNGATAGCTTTCAAAGGAAAAGCGGCGAGGACTTCATGTACAA
GGGAGTAAACCCGCTGCCTGCACAGAGGAACCTCGCATCGCCACCAGATCTCAGTCCACAGNAACCGGTGTTCTCTTTAG
ATAACTACAGATATNACAGATACTCCTCGCCGTCGCTTCCTGATGTGAGCAGCAGTAGAACAAGCCGAGAGGATATCGAT
GTATAGTACAGATTACACAGGCCACCACAGTAGTACGTCGAACGCCGACGTGGGAGCATATGCTGTGCCTTGACGTTGGA
TTCCATAATACCTTGCTTGCAGCACAGCGAAGGTACCNAATACTATTTGTCGTCACCCCTAATCTTTTATCTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17582.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis