Browse Element(s) Details


Os.12755.2.S1_s_at

Description gb:CA758727
DB_XREF= gi:25802766
DB_XREF=BR040013000_PLATE_A12_89_088.ab1
CLONE=BR040013000_PLATE_A12_89_088.ab1
TID=Os.12755.2
CNT=11
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.12755 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with strong similarity to protein ref:NP_197516.1 (A.thaliana) ribosomal protein L7Ae-like (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1380010/11NHP2-like protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13760Os.18639.1.S1_at11/113+7428850..7432091Small nuclear ribonucleoprotein Sm D3, putative, expressed
LOC_Os03g13770Os.27347.1.S1_a_at11/113+7432674..7436825expressed protein
LOC_Os03g13780Os.35344.18.S1_x_at9/113+7437731..7443905transposon protein, putative, Mutator sub-class
LOC_Os03g13780Os.35344.3.S1_x_at9/113+7437731..7443905transposon protein, putative, Mutator sub-class
LOC_Os03g13780OsAffx.22940.5.S1_x_at3/113+7437731..7443905transposon protein, putative, Mutator sub-class
LOC_Os03g13790Os.14693.1.S2_at11/113+7448669..7454495myb family transcription factor, putative, expressed
LOC_Os03g13790Os.14693.1.S1_at11/113+7448669..7454495myb family transcription factor, putative, expressed
LOC_Os03g13800Os.12755.2.S1_s_at10/113+7455335..7457261NHP2-like protein 1, putative, expressed
LOC_Os03g13810Os.13497.1.S2_at11/113+7459432..7462341expressed protein
LOC_Os03g13810Os.13497.1.S1_at11/113+7459432..7462341expressed protein
LOC_Os03g13820Os.10079.1.S1_at11/113+7462397..7466601protein kinase family protein, putative, expressed
LOC_Os03g13830OsAffx.3232.1.S1_at11/113+7475103..7478415pentatricopeptide, putative, expressed
LOC_Os03g13830OsAffx.11634.2.S1_x_at1/113+7475103..7478415pentatricopeptide, putative, expressed
LOC_Os03g13830OsAffx.11634.1.S1_x_at1/113+7475103..7478415pentatricopeptide, putative, expressed
LOC_Os03g13840Os.7862.1.S1_at11/113+7479210..7482984Senescence-associated protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12755.2.S1_s_at--701--8071Chr03:7455616..7455640 (25 bp)
GGACGCGCAGCTGACGATGACCATC
LOC_Os03g13800
Os.12755.2.S1_s_at--337--4111NONE
CGAAGCGACGAAGACCCTGAACAGG
NONE
Os.12755.2.S1_s_at--319--5451Chr03:7456676..7456700 (25 bp)
GAACGTTCCATATGTTTTTGTCCCT
LOC_Os03g13800
Os.12755.2.S1_s_at--609--731Chr03:7456687..7456711 (25 bp)
ATGTTTTTGTCCCTTCGAAGCAAGC
LOC_Os03g13800
Os.12755.2.S1_s_at--118--5011Chr03:7456722..7456746 (25 bp)
GCATGTGGCGTTACTAGACCTGTCA
LOC_Os03g13800
Os.12755.2.S1_s_at--285--1391Chr03:7456737..7456761 (25 bp)
AGACCTGTCATTGCTTGTTCAGTGA
LOC_Os03g13800
Os.12755.2.S1_s_at--354--1071Chr03:7456771..7456795 (25 bp)
AGGGCAGTCAGCTGAAGACACCGAT
LOC_Os03g13800
Os.12755.2.S1_s_at--276--5411Chr03:7456917..7456941 (25 bp)
GAAGCTCCTCATTTGATTTACCAAG
LOC_Os03g13800
Os.12755.2.S1_s_at--153--1391Chr03:7456940..7456964 (25 bp)
AGACCTTTCAGTGTGATGGGCCTCA
LOC_Os03g13800
Os.12755.2.S1_s_at--804--791Chr03:7456955..7456979 (25 bp)
ATGGGCCTCAGAGCGACACAGTTTT
LOC_Os03g13800
Os.12755.2.S1_s_at--775--5611Chr03:7456969..7456993 (25 bp)
GACACAGTTTTTCAGAGGCTTGGAC
LOC_Os03g13800
Target Sequence 
GGACGCGCAGCTGACGATGACCATCCTCGACCTCGTCCAGCAGGCCTCCAATTACAAGCAGCTCAAGAAGGGGGCCAACG
AAGCGACGAAGACCCTGAACAGGGGTATATCAGAGTTCGTGGTGATGGCGGCCGACACGGAGCCGCTCGAGATCCTTCTC
CACCTCCCCCTGCTCGCGGAGGATAAGAACGTTCCATATGTTTTTGTCCCTTCGAAGCAAGCCCTTGGCCGCGCATGTGG
CGTTACTAGACCTGTCATTGCTTGTTCAGTGACCAGCAACGAGGGCAGTCAGCTGAAGACACCGATACAGAATCTCAAGG
ATGCTATCGAGAAGCTCCTCATTTGATTTACCAAGACCTTTCAGTGTGATGGGCCTCAGAGCGACACAGTTTTTCAGAGG
CTTGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12755.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis