Browse Element(s) Details


Os.7867.3.S1_at

Description gb:AK111657.1
DB_XREF= gi:37988320
TID=Os.7867.3
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7867 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-030-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013140J15, full insert sequence.
FL= gb:AK111657.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2699011/11Phospholipid-transporting ATPase 2, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g26954Os.5882.1.S1_at11/115+15578580..15584341Saposin-like type B, region 1 family protein, expressed
LOC_Os05g26970NANA5+15588392..15593533retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g26980OsAffx.14842.1.S1_at11/115+15601304..15601642hypothetical protein
LOC_Os05g26990Os.38770.1.S1_at11/115+15603938..15608892Phospholipid-transporting ATPase 2, putative
LOC_Os05g26990Os.7867.3.S1_at11/115+15603938..15608892Phospholipid-transporting ATPase 2, putative
LOC_Os05g26990Os.7867.1.S1_x_at10/115+15603938..15608892Phospholipid-transporting ATPase 2, putative
LOC_Os05g26990Os.46330.1.S1_at7/115+15603938..15608892Phospholipid-transporting ATPase 2, putative
LOC_Os05g27000NANA5+15620769..15622793hypothetical protein
LOC_Os05g27010Os.17273.1.S1_at11/115+15630952..15632647POT family protein, expressed
LOC_Os05g27010OsAffx.14844.1.S1_s_at11/115+15630952..15632647POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015662molecular_functionATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7867.3.S1_at--389--10752Chr09:1610191..1610215 (25 bp)
TTGATAGTTCAAATATGGGCTTTTA
NONE
Os.7867.3.S1_at--322--9692Chr09:1610076..1610207 (25 bp)
TCAAATATGGGCTTTTAGACCTTTT
NONE
Os.7867.3.S1_at--1042--5831Chr05:15604449..15604473 (25 bp)
GACCTTTTTTCCAGTATGTGTATTA
LOC_Os05g26990
Os.7867.3.S1_at--790--4932Chr09:1610138..1610162 (25 bp)
GCATTATGGGTGTATTAAATTCTTT
NONE
Os.7867.3.S1_at--299--7071Chr05:15604367..15604391 (25 bp)
GTAAGGATAAAATCCCTCATATGAT
LOC_Os05g26990
Os.7867.3.S1_at--1127--531Chr05:15604356..15604380 (25 bp)
ATCCCTCATATGATAAACCCTTCGA
LOC_Os05g26990
Os.7867.3.S1_at--747--2372Chr09:1610058..1610085 (25 bp)
AAACCCTTCGAGGACAACTGCATGC
NONE
Os.7867.3.S1_at--1138--10612Chr09:1610052..1610076 (25 bp)
TTCGAGGACAACTGCATGCCTACAT
NONE
Os.7867.3.S1_at--89--8152Chr09:1610052..1610071 (20 bp)
GGACAACTGCATGCCTACATTTTTT
NONE
Os.7867.3.S1_at--373--5291Chr05:15604252..15604276 (25 bp)
GAAGAGTTGAACCTCTTTGGGTTAT
LOC_Os05g26990
Os.7867.3.S1_at--542--6051Chr05:15604249..15604273 (25 bp)
GAGTTGAACCTCTTTGGGTTATATT
LOC_Os05g26990
Target Sequence 
TTGATAGTTCAAATATGGGCTTTTAGACCTTTTTTCCAGTATGTGTATTATATGCATTATGGGTGTATTAAATTCTTTTT
ATAATATATCTTTTGAAAATTAATATAGTAAGGATAAAATCCCTCATATGATAAACCCTTCGAGGACAACTGCATGCCTA
CATTTTTTTTTTCCTGGAAGTGCTACTCTGCTGTGATCAATCATATTTGTTTTTACTGGATTGAAGAGTTGAACCTCTTT
GGGTTATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7867.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis