Browse Element(s) Details


Os.7873.1.S1_at

Description gb:AK120929.1
DB_XREF= gi:37990552
TID=Os.7873.1
CNT=137
FEA=FLmRNA
TIER=FL+Stack
STK=42
UG=Os.7873 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-013-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036A14, full insert sequence.
FL= gb:AK120929.1 gb:AK062189.1 gb:AK103933.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0582011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05760OsAffx.23212.1.S1_at2/117+2770385..2771359hypothetical protein
LOC_Os07g05770OsAffx.22940.2.S1_s_at10/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.5.S1_x_at9/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770Os.35344.3.S1_x_at8/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.3.S1_x_at8/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770Os.35344.18.S1_x_at8/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.2.S1_at6/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.1.S1_s_at6/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.5.S1_at5/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.31552.2.S1_at1/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05780NANA7+2781567..2783807hypothetical protein
LOC_Os07g05790NANA7+2784882..2786723retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g05800OsAffx.28293.1.S1_at10/117+2789750..2790857Lactoylglutathione lyase, putative, expressed
LOC_Os07g05810Os.8946.1.S1_at11/117+2792436..2795656expressed protein
LOC_Os07g05820Os.51287.1.S1_at11/117+2795991..2799663expressed protein
LOC_Os07g05820Os.7873.1.S1_at11/117+2795991..2799663expressed protein
LOC_Os07g05820Os.7873.1.S1_x_at11/117+2795991..2799663expressed protein
LOC_Os07g05830OsAffx.5224.1.S1_at9/117+2800228..2802509ZIM motif family protein, expressed
LOC_Os07g05840OsAffx.28294.2.S1_x_at11/117+2805240..2808129expressed protein
LOC_Os07g05840OsAffx.28294.2.S1_at11/117+2805240..2808129expressed protein
LOC_Os07g05840Os.10038.1.S1_s_at11/117+2805240..2808129expressed protein
LOC_Os07g05840OsAffx.28294.3.S1_x_at8/117+2805240..2808129expressed protein
LOC_Os07g05850NANA7+2808505..2812192transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g05860OsAffx.16109.1.S1_at11/117+2812436..2813389hypothetical protein
LOC_Os07g05870Os.57565.1.S1_at7/117+2817437..2821212expressed protein
LOC_Os07g05880Os.18840.1.S1_at11/117+2822624..2824937Kelch motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008891molecular_functionglycolate oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7873.1.S1_at--767--3771Chr07:2798882..2799000 (25 bp)
CTCGAGGAGGTTGTGAAGGCGGCTC
LOC_Os07g05820
Os.7873.1.S1_at--1084--4251Chr07:2799214..2799238 (25 bp)
CCGGAGTCCGGAACGTGCTGCAGAT
LOC_Os07g05820
Os.7873.1.S1_at--83--6111Chr07:2799217..2799241 (25 bp)
GAGTCCGGAACGTGCTGCAGATGCT
LOC_Os07g05820
Os.7873.1.S1_at--923--2211Chr07:2799328..2799352 (25 bp)
ACAAGCTCGGCGTCATGCCGTCTCG
LOC_Os07g05820
Os.7873.1.S1_at--682--8371Chr07:2799336..2799360 (25 bp)
GGCGTCATGCCGTCTCGCTTGTAAA
LOC_Os07g05820
Os.7873.1.S1_at--294--7131Chr07:2799339..2799363 (25 bp)
GTCATGCCGTCTCGCTTGTAAACAA
LOC_Os07g05820
Os.7873.1.S1_at--633--711Chr07:2799512..2799536 (25 bp)
ATGATGCTGCGTCATGTACTTTTGT
LOC_Os07g05820
Os.7873.1.S1_at--241--6351Chr07:2799514..2799538 (25 bp)
GATGCTGCGTCATGTACTTTTGTTA
LOC_Os07g05820
Os.7873.1.S1_at--522--9111Chr07:2799516..2799540 (25 bp)
TGCTGCGTCATGTACTTTTGTTAAT
LOC_Os07g05820
Os.7873.1.S1_at--662--3811Chr07:2799518..2799542 (25 bp)
CTGCGTCATGTACTTTTGTTAATTG
LOC_Os07g05820
Os.7873.1.S1_at--576--3671Chr07:2799530..2799554 (25 bp)
CTTTTGTTAATTGTCGAGTGATTGA
LOC_Os07g05820
Target Sequence 
CTCGAGGAGGTTGTGAAGGCGGCTCGCGGGCAGCTCCCCGTCTTCCTCGACGGCGGCGTCCGCCGCGGCACCGACGTCTT
CAAGGCGCTCGCCCTCGGCGCCGCCGGCGTCTTCATCGGGAGGCCGGTGGTGTTCTCGCTGGCGGCGGCGGGGGAGGCCG
GAGTCCGGAACGTGCTGCAGATGCTCCGCGACGAGTTCGAGCTCACCATGGCGCTCAGCGGCTGCACCTCCCTCGCCGAC
ATCACCCGCAACCACGTCATCACCGAGGCCGACAAGCTCGGCGTCATGCCGTCTCGCTTGTAAACAACAACGACGGCGAA
CTTGTCGCCGTCGATCGATCACCGGCCGGCCGCCGCGACACGCTTTGCCGGCCGACGGATGATCGGCCGGGAATGAAGAA
GAAGGTAGTAGCTGCCGAAGAAAAGATTGGAAGATGCAAAGTTCTATAATTTTGGATGATGCTGCGTCATGTACTTTTGT
TAATTGTCGAGTGATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7873.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis