Browse Element(s) Details


Os.7883.1.A1_at

Description gb:AK068187.1
DB_XREF= gi:32978205
TID=Os.7883.1
CNT=24
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.7883 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013134H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134H02, full insert sequence.
FL= gb:AK059330.1 gb:AK068187.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0115411/11trans-2-enoyl-CoA reductase, mitochondrial precursor, putative, expressed
LOC_Os12g011606/11trans-2-enoyl-CoA reductase, mitochondrial precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01140Os.8642.1.S1_a_at11/1111+78401..93104Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os11g01140Os.8642.4.S1_x_at11/1111+78401..93104Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os11g01140Os.53644.1.S1_at1/1111+78401..93104Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os11g01154OsAffx.7452.1.S1_at11/1111+93456..98901trans-2-enoyl-CoA reductase, mitochondrial precursor, putative, expressed
LOC_Os11g01154Os.7883.1.A1_at11/1111+93456..98901trans-2-enoyl-CoA reductase, mitochondrial precursor, putative, expressed
LOC_Os11g01170Os.2616.1.S1_at10/1111+99872..103175tonneau 1b, putative, expressed
LOC_Os11g01180Os.50258.2.S1_a_at11/1111+106236..107210Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os11g01190Os.15622.1.S1_at10/1111+108647..115986expressed protein
LOC_Os11g01200Os.11572.1.S1_at5/1111+116181..123018leucine-rich repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0030154biological_processcell differentiation
GO:0005739cellular_componentmitochondrion
GO:0008270molecular_functionzinc ion binding
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7883.1.A1_at--1024--6772Chr12:93654..93678 (25 bp)
GTTACTGTTTCTACTTCATCTTTCA
LOC_Os12g01160
Os.7883.1.A1_at--293--6412Chr12:94108..94132 (25 bp)
GATCTTTCCCTAAGAGGATTCTGGC
LOC_Os12g01160
Os.7883.1.A1_at--681--6612Chr12:94191..94215 (25 bp)
GTTGGACCTGGTGCACGAAGGCAAA
LOC_Os12g01160
Os.7883.1.A1_at--760--1872Chr12:94330..94350 (21 bp)
ACGAGATGGAGTTGACGCCCTTCAG
LOC_Os12g01160
Os.7883.1.A1_at--905--10532Chr12:94346..94370 (25 bp)
TTCAGTGACTTCCATTTGGCTCTTG
LOC_Os12g01160
Os.7883.1.A1_at--931--10852Chr12:94361..94385 (25 bp)
TTGGCTCTTGATAAGGCACTCGGCA
LOC_Os12g01160
Os.7883.1.A1_at--980--7532Chr12:94522..94546 (25 bp)
GTGGCCTCTTTCAGTAGTAGTTACC
NONE
Os.7883.1.A1_at--812--1712Chr12:94544..94568 (25 bp)
ACCAGGCTGACTTGGGAAGCGGCAA
NONE
Os.7883.1.A1_at--200--872Chr12:94607..94631 (25 bp)
ATGGCGGATCACTTCACTTGAGAGT
NONE
Os.7883.1.A1_at--296--5772Chr12:94637..94661 (25 bp)
GACGTAGTATATCACTTCACTTCAA
NONE
Os.7883.1.A1_at--457--6872Chr12:94707..94731 (25 bp)
GTATTGATTACCGTCCGATCTGGAG
NONE
Target Sequence 
GTTACTGTTTCTACTTCATCTTTCATTTTTAAGGATCTTTCCCTAAGAGGATTCTGGCTACAGAAGTGGATGAGTTCAGA
TAAGGCAGAGGAATCTAGAACAATGATAGACTNCCTGTTGGACCTGGTGCACGAAGGCAAACTTAAATACGAGATGGAGT
TGACGCCCTTCAGTGACTTCCATTTGGCTCTTGATAAGGCACTCGGCAAACATGGAAGCCAACCAAAGCAGGTTCTCAAG
TTNTAAGATAATGCAAGGACAACGGATGAGAGAGAGCTTGTATTACAAAAACAGGAGTAGAAAAAAGGATGTAAACAGTG
CATGTGTGCGTGGCTAGGGGATCGGTGGCCTCTTTCAGTAGTAGTTACCAGGCTGACTTGGGAAGCGGCAATATGTTTTG
CGGTGATTGCAGCGGATNTCTGTCCAATAATGGCGGATCACTTCACTTGAGAGTAGAAAGACGTAGTATATCACTTCACT
TCAATCCCCCCGCGCAATATGACCTTGTGTGGTTGTAAGTTCTGAAGTGGTATTGATTACCGTCCGATCTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7883.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis