Browse Element(s) Details


Os.15622.1.S1_at

Description gb:AK103750.1
DB_XREF= gi:32988959
TID=Os.15622.1
CNT=28
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.15622 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for hypothetical protein, partial cds, clone: 13YPB053
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033142N16, full insert sequence.
FL= gb:AK103750.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0119011/11RNA recognition motif family protein, expressed
LOC_Os11g0119010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01140Os.8642.1.S1_a_at11/1112+74285..88965Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os12g01140Os.8642.4.S1_x_at11/1112+74285..88965Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os12g01140Os.53644.1.S1_at1/1112+74285..88965Nonphototropic hypocotyl protein 1, putative, expressed
LOC_Os12g01150OsAffx.7452.1.S1_at11/1112+90859..91328hypothetical protein
LOC_Os12g01160Os.7883.1.A1_at6/1112+92091..94423trans-2-enoyl-CoA reductase, mitochondrial precursor, putative
LOC_Os12g01170Os.2616.1.S1_at10/1112+95642..98986tonneau 1b, putative, expressed
LOC_Os12g01180Os.50258.2.S1_a_at11/1112+99803..103005WRKY DNA binding domain containing protein, expressed
LOC_Os12g01180Os.50258.1.S1_at11/1112+99803..103005WRKY DNA binding domain containing protein, expressed
LOC_Os12g01190Os.15622.1.S1_at11/1112+104922..111632RNA recognition motif family protein, expressed
LOC_Os12g01200Os.11572.1.S1_at11/1112+111744..119224leucine-rich repeat family protein, putative, expressed
LOC_Os12g01210Os.47934.1.S1_x_at11/1112+124923..127272pentatricopeptide, putative, expressed
LOC_Os12g01210Os.47934.1.S1_at11/1112+124923..127272pentatricopeptide, putative, expressed
LOC_Os12g01220Os.6077.1.S1_at11/1112+127352..132372expressed protein
LOC_Os12g01230OsAffx.31535.2.S1_x_at11/1112+132654..134949expressed protein
LOC_Os12g01230OsAffx.31535.1.S1_at9/1112+132654..134949expressed protein
LOC_Os12g01240Os.6196.1.S1_x_at11/1112+135267..140056mitochondrial substrate carrier family protein, putative, expressed
LOC_Os12g01240Os.6196.2.S1_at9/1112+135267..140056mitochondrial substrate carrier family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15622.1.S1_at--350--6612Chr12:110893..110912 (20 bp)
GATTGGTTGCACAGGCTCAAGATAC
LOC_Os12g01190
Os.15622.1.S1_at--123--10772Chr12:110921..110945 (25 bp)
TTGTTGAGCTTGTGGATTGGCGCAT
LOC_Os12g01190
Os.15622.1.S1_at--319--6612Chr12:110935..110959 (25 bp)
GATTGGCGCATGAGTGTTTATTGAA
LOC_Os12g01190
Os.15622.1.S1_at--709--4932Chr12:110962..110986 (25 bp)
GCATTGGATTCAAGTGGACCAGCAT
LOC_Os12g01190
Os.15622.1.S1_at--246--7712Chr12:110993..111017 (25 bp)
GGGTGTGTAACCAGACGTTTCAAGC
LOC_Os12g01190
Os.15622.1.S1_at--438--1392Chr12:111005..111025 (21 bp)
AGACGTTTCAAGCACCAGGTTCTGT
LOC_Os12g01190
Os.15622.1.S1_at--118--5092Chr12:111236..111256 (21 bp)
GCACCAGGTTCTGTTTTGGGCGAAA
LOC_Os12g01190
Os.15622.1.S1_at--590--331Chr12:111307..111331 (25 bp)
ATACTTGTGGTGGAAGCAGACTCGA
LOC_Os12g01190
Os.15622.1.S1_at--918--232Chr12:111336..111360 (25 bp)
ATATAAACCGTTTAGCATTTGCTTC
LOC_Os12g01190
Os.15622.1.S1_at--158--6492Chr12:111433..111457 (25 bp)
GATACGTTACTCGTTGCTAGTAGCT
LOC_Os12g01190
Os.15622.1.S1_at--1073--2952Chr12:111510..111534 (25 bp)
AATGGCTATATGGTACCAGGCCAGC
LOC_Os12g01190
Target Sequence 
GATTGGTTGCACAGGCTCAAGATACTCAACTTGGTGATTGTTGAGCTTGTGGATTGGCGCATGAGTGTTTATTGAAAGGC
ATTGGATTCAAGTGGACCAGCATGAAACTGGGTGTGTAACCAGACGTTTCAAGCACCAGGTTCTGTTTTGGGCGAAAGGA
TATATATNTCAAAGATGCATCCATGAGGTTNTCCTTCAAGTTTATATATACTTGTGGTGGAAGCAGACTCGAGAATATAT
AAACCGTTTAGCATTTGCTTCTTTCTTCTTTTTTTGCCGTCATGTGGAAATATTTTCTTGGTTTTGGCATAGTAAAAGCG
TCATTTTGTACATGATACGTTACTCGTTGCTAGTAGCTTTTGTGGTGCACATGAGATTATTTTGNTGATGGGTTTGCTGA
ACCAAACGTAAATGGCTATATGGTACCAGGCCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15622.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis