Browse Element(s) Details


Os.47934.1.S1_x_at

Description gb:AK072365.1
DB_XREF= gi:32982388
TID=Os.47934.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47934 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023061I03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023061I03, full insert sequence.
FL= gb:AK072365.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0121011/11pentatricopeptide, putative, expressed
LOC_Os11g012104/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01180Os.50258.2.S1_a_at11/1112+99803..103005WRKY DNA binding domain containing protein, expressed
LOC_Os12g01180Os.50258.1.S1_at11/1112+99803..103005WRKY DNA binding domain containing protein, expressed
LOC_Os12g01190Os.15622.1.S1_at11/1112+104922..111632RNA recognition motif family protein, expressed
LOC_Os12g01200Os.11572.1.S1_at11/1112+111744..119224leucine-rich repeat family protein, putative, expressed
LOC_Os12g01210Os.47934.1.S1_x_at11/1112+124923..127272pentatricopeptide, putative, expressed
LOC_Os12g01210Os.47934.1.S1_at11/1112+124923..127272pentatricopeptide, putative, expressed
LOC_Os12g01220Os.6077.1.S1_at11/1112+127352..132372expressed protein
LOC_Os12g01230OsAffx.31535.2.S1_x_at11/1112+132654..134949expressed protein
LOC_Os12g01230OsAffx.31535.1.S1_at9/1112+132654..134949expressed protein
LOC_Os12g01240Os.6196.1.S1_x_at11/1112+135267..140056mitochondrial substrate carrier family protein, putative, expressed
LOC_Os12g01240Os.6196.2.S1_at9/1112+135267..140056mitochondrial substrate carrier family protein, putative, expressed
LOC_Os12g01250OsAffx.31536.1.S1_at10/1112+147185..152390hypothetical protein
LOC_Os12g01250Os.33915.1.S1_at1/1112+147185..152390hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006397biological_processmRNA processing
GO:0009570cellular_componentchloroplast stroma
GO:0003729molecular_functionmRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47934.1.S1_x_at--132--4592Chr12:126756..126780 (25 bp)
GCGACGTACGGGAGCCTGGCGAAGG
LOC_Os12g01210
Os.47934.1.S1_x_at--138--4552Chr12:126950..126974 (25 bp)
GCCCAACAAGGCCAAGTACAAGAGG
LOC_Os12g01210
Os.47934.1.S1_x_at--964--7992Chr12:126997..127021 (25 bp)
GGATGTTCACCAGCAAGCACGCGTC
LOC_Os12g01210
Os.47934.1.S1_x_at--712--2672Chr12:127053..127077 (25 bp)
AAGCGCGCCGCGGAGGCATTCAAGT
LOC_Os12g01210
Os.47934.1.S1_x_at--589--4451Chr12:127135..127159 (25 bp)
GCCTCAACTAACACCCTACTATATA
LOC_Os12g01210
Os.47934.1.S1_x_at--667--1811Chr12:127147..127171 (25 bp)
ACCCTACTATATACTACTAATGATA
LOC_Os12g01210
Os.47934.1.S1_x_at--915--733Chr12:127189..127213 (25 bp)
ATGTTTTATGTACTACTCCTACAGT
LOC_Os12g01210
Os.47934.1.S1_x_at--223--8752Chr12:127197..127221 (25 bp)
TGTACTACTCCTACAGTCCATGAAG
LOC_Os12g01210
Os.47934.1.S1_x_at--778--1992Chr12:127203..127227 (25 bp)
ACTCCTACAGTCCATGAAGCTACTT
LOC_Os12g01210
Os.47934.1.S1_x_at--605--3732Chr12:127207..127231 (25 bp)
CTACAGTCCATGAAGCTACTTGCTT
LOC_Os12g01210
Os.47934.1.S1_x_at--920--5392Chr12:127218..127242 (25 bp)
GAAGCTACTTGCTTCCCTTGCTCAT
LOC_Os12g01210
Target Sequence 
GCGACGTACGGGAGCCTGGCGAAGGGGATCGCGGTGGCGAGGCGGCCGGGGGAGGCGCTGCTGCTGTGGGAGGAGATAAA
GGAGAAGGAGGTGGACGGGGAGGTGGTGGAGGCGCTGGCGGACGTGTGCGTGCGGGCGGCGCTGTTCAGGAAGGCGCTGG
AGATGGTGGCGAGGATGGAGGAGATGGGGGTGGAGCCCAACAAGGCCAAGTACAAGAGGATGTACGNTGGACCTGCACTN
CGCNGGATGTTCACCAGCAAGCACGCGTCGCAGGCGAGGCAGGATCGGAGGCGGGAGAGGAAGCGCGCCGCGGAGGCATT
CAAGTTCTGGCTCGGCCTCCCCAACTCCTACTACGCCACCGACTGGCGCCTCCAAGACGACGGCCTCAACTAACACCCTA
CTATATACTACTAATGATAATGTTAAATCTTAACANATGTTTTATGTACTACTCCTACAGTCCATGAAGCTACTTGCTTC
CCTTGCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47934.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis