Browse Element(s) Details


OsAffx.31535.1.S1_at

Description tigr:9639.m00024
TID=OsAffx.31535.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0124011/11IBR domain containing protein
LOC_Os12g012309/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01190Os.15622.1.S1_at10/1111+108647..115986expressed protein
LOC_Os11g01200Os.11572.1.S1_at5/1111+116181..123018leucine-rich repeat family protein, putative, expressed
LOC_Os11g01210Os.47934.1.S1_x_at4/1111+126373..128004pentatricopeptide, putative
LOC_Os11g01210Os.47934.1.S1_at3/1111+126373..128004pentatricopeptide, putative
LOC_Os11g01220Os.6077.1.S1_at11/1111+128996..133454expressed protein
LOC_Os11g01230NANA11+133791..134081expressed protein
LOC_Os11g01240OsAffx.31535.1.S1_at11/1111+135610..137959IBR domain containing protein
LOC_Os11g01240OsAffx.31535.2.S1_x_at8/1111+135610..137959IBR domain containing protein
LOC_Os11g01250OsAffx.18615.1.S1_x_at11/1111+138893..139318hypothetical protein
LOC_Os11g01250OsAffx.18615.1.S1_at11/1111+138893..139318hypothetical protein
LOC_Os11g01260NANA11+140220..141665expressed protein
LOC_Os11g01270Os.6196.2.S1_at11/1111+143175..148102mitochondrial substrate carrier family protein, putative, expressed
LOC_Os11g01270Os.6196.1.S1_x_at10/1111+143175..148102mitochondrial substrate carrier family protein, putative, expressed
LOC_Os11g01280Os.33915.1.S1_at11/1111+151138..154481expressed protein
LOC_Os11g01290OsAffx.6952.1.S1_at11/1111+155018..157032hypothetical protein
LOC_Os11g01300OsAffx.30763.1.S1_s_at11/1111+161297..162402Sec61beta family protein, expressed
LOC_Os11g01300Os.12962.1.S1_at1/1111+161297..162402Sec61beta family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31535.1.S1_at--782--5431Chr11:137429..137453 (25 bp)
GAACCTTGCACAGCAGCGGTTATGG
LOC_Os11g01240
OsAffx.31535.1.S1_at--816--4311Chr11:137432..137456 (25 bp)
CCTTGCACAGCAGCGGTTATGGCGT
LOC_Os11g01240
OsAffx.31535.1.S1_at--1160--10092Chr12:134439..134463 (25 bp)
TATGGCGTCAATGTATCCGATGCAA
LOC_Os12g01230
OsAffx.31535.1.S1_at--937--4632Chr12:134443..134467 (25 bp)
GCGTCAATGTATCCGATGCAAGCAC
LOC_Os12g01230
OsAffx.31535.1.S1_at--113--6912Chr12:134451..134475 (25 bp)
GTATCCGATGCAAGCACATGATTGA
LOC_Os12g01230
OsAffx.31535.1.S1_at--887--5112Chr12:134464..134488 (25 bp)
GCACATGATTGAACTAGCAGAGGGT
LOC_Os12g01230
OsAffx.31535.1.S1_at--623--5032Chr12:134480..134504 (25 bp)
GCAGAGGGTTGCTACCATATGACTT
LOC_Os12g01230
OsAffx.31535.1.S1_at--970--7672Chr12:134485..134509 (25 bp)
GGGTTGCTACCATATGACTTGCGTG
LOC_Os12g01230
OsAffx.31535.1.S1_at--984--4852Chr12:134490..134510 (21 bp)
GCTACCATATGACTTGCGTGTGCGG
LOC_Os12g01230
OsAffx.31535.1.S1_at--1037--252Chr12:134496..134684 (25 bp)
ATATGACTTGCGTGTGCGGCTATGA
LOC_Os12g01230
OsAffx.31535.1.S1_at--430--8952Chr12:134499..134687 (25 bp)
TGACTTGCGTGTGCGGCTATGAGTT
LOC_Os12g01230
Target Sequence 
GAACCTTGCACAGCAGCGGTTATGGCGTCAATGTATCCGATGCAAGCACATGATTGAACTAGCAGAGGGTTGCTACCATA
TGACTTGCGTGTGCGGCTATGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31535.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis