Browse Element(s) Details


Os.33915.1.S1_at

Description gb:AK073546.1
DB_XREF= gi:32983569
TID=Os.33915.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33915 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033041K10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033041K10, full insert sequence.
FL= gb:AK073546.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0128011/11expressed protein
LOC_Os12g012501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01210Os.47934.1.S1_x_at4/1111+126373..128004pentatricopeptide, putative
LOC_Os11g01210Os.47934.1.S1_at3/1111+126373..128004pentatricopeptide, putative
LOC_Os11g01220Os.6077.1.S1_at11/1111+128996..133454expressed protein
LOC_Os11g01230NANA11+133791..134081expressed protein
LOC_Os11g01240OsAffx.31535.1.S1_at11/1111+135610..137959IBR domain containing protein
LOC_Os11g01240OsAffx.31535.2.S1_x_at8/1111+135610..137959IBR domain containing protein
LOC_Os11g01250OsAffx.18615.1.S1_x_at11/1111+138893..139318hypothetical protein
LOC_Os11g01250OsAffx.18615.1.S1_at11/1111+138893..139318hypothetical protein
LOC_Os11g01260NANA11+140220..141665expressed protein
LOC_Os11g01270Os.6196.2.S1_at11/1111+143175..148102mitochondrial substrate carrier family protein, putative, expressed
LOC_Os11g01270Os.6196.1.S1_x_at10/1111+143175..148102mitochondrial substrate carrier family protein, putative, expressed
LOC_Os11g01280Os.33915.1.S1_at11/1111+151138..154481expressed protein
LOC_Os11g01290OsAffx.6952.1.S1_at11/1111+155018..157032hypothetical protein
LOC_Os11g01300OsAffx.30763.1.S1_s_at11/1111+161297..162402Sec61beta family protein, expressed
LOC_Os11g01300Os.12962.1.S1_at1/1111+161297..162402Sec61beta family protein, expressed
LOC_Os11g01310OsAffx.18616.1.S1_at11/1111+163588..164406hypothetical protein
LOC_Os11g01320OsAffx.30764.1.S1_at10/1111+173253..179087expressed protein
LOC_Os11g01320OsAffx.30764.2.S1_at3/1111+173253..179087expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33915.1.S1_at--96--3871Chr11:154017..154041 (25 bp)
CTGAGTGTTGATTTGGTGGCCTTGC
LOC_Os11g01280
Os.33915.1.S1_at--912--2771Chr11:154070..154094 (25 bp)
AAGAGGCAGGGTTGTTTTCACACCT
LOC_Os11g01280
Os.33915.1.S1_at--295--10371Chr11:154084..154108 (25 bp)
TTTTCACACCTGACGAGGCTGGGAG
LOC_Os11g01280
Os.33915.1.S1_at--196--5031Chr11:154111..154135 (25 bp)
GCAGTGGTGTATTCGATCTTGTGTT
LOC_Os11g01280
Os.33915.1.S1_at--224--2692Chr12:151672..151695 (24 bp)
AAGCTACTGTTTGTTGGTCGCTCCT
LOC_Os12g01250
Os.33915.1.S1_at--324--9431Chr11:154194..154218 (25 bp)
TCGGGCAACCCTTGGGCATAATGCT
LOC_Os11g01280
Os.33915.1.S1_at--476--3011Chr11:154213..154237 (25 bp)
AATGCTCCTGGCAGCAGACGTTGAA
LOC_Os11g01280
Os.33915.1.S1_at--859--9111Chr11:154241..154265 (25 bp)
TGCTGTCATGATCTATTTGCCTATA
LOC_Os11g01280
Os.33915.1.S1_at--663--1151Chr11:154303..154327 (25 bp)
AGTCGAGTTGCAGCTAGTGTGTTAA
LOC_Os11g01280
Os.33915.1.S1_at--1050--6451Chr11:154398..154422 (25 bp)
GATCAATGTTATTCTGTCTGTCCTT
LOC_Os11g01280
Os.33915.1.S1_at--36--7191Chr11:154413..154437 (25 bp)
GTCTGTCCTTGCTTGAGATGTTAAT
LOC_Os11g01280
Target Sequence 
CTGAGTGTTGATTTGGTGGCCTTGCAAGNCAACAATAGTTCAGAAATCGTCTCAAGAGGCAGGGTTGTTTTCACACCTGA
CGAGGCTGGGAGGAGCAGTGGTGTATTCGATCTTGTGTTTTGTAAGGTGGAAGCTACTGTTTGTTGGTCGCTCCTCGCAA
CCCTTGGGCAAATGCTCTCGGGCAACCCTTGGGCATAATGCTCCTGGCAGCAGACGTTGAACAATGCTGTCATGATCTAT
TTGCCTATAATTTCTGCCTAATTGTATTAAGACGGTGAATCTGTGTAGTCGAGTTGCAGCTAGTGTGTTAATCTGTCTGA
ATATTTCCAAGGGTGTTTCCTTCCTTTTGGTTGGTATTTAGCATCATGTTNATGAGGGATCTGATCAATGTTATTCTGTC
TGTCCTTGCTTGAGATGTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis