Browse Element(s) Details


OsAffx.6952.1.S1_at

Description tigr:9639.m00029
TID=OsAffx.6952.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0129011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01220Os.6077.1.S1_at11/1111+128996..133454expressed protein
LOC_Os11g01230NANA11+133791..134081expressed protein
LOC_Os11g01240OsAffx.31535.1.S1_at11/1111+135610..137959IBR domain containing protein
LOC_Os11g01240OsAffx.31535.2.S1_x_at8/1111+135610..137959IBR domain containing protein
LOC_Os11g01250OsAffx.18615.1.S1_x_at11/1111+138893..139318hypothetical protein
LOC_Os11g01250OsAffx.18615.1.S1_at11/1111+138893..139318hypothetical protein
LOC_Os11g01260NANA11+140220..141665expressed protein
LOC_Os11g01270Os.6196.2.S1_at11/1111+143175..148102mitochondrial substrate carrier family protein, putative, expressed
LOC_Os11g01270Os.6196.1.S1_x_at10/1111+143175..148102mitochondrial substrate carrier family protein, putative, expressed
LOC_Os11g01280Os.33915.1.S1_at11/1111+151138..154481expressed protein
LOC_Os11g01290OsAffx.6952.1.S1_at11/1111+155018..157032hypothetical protein
LOC_Os11g01300OsAffx.30763.1.S1_s_at11/1111+161297..162402Sec61beta family protein, expressed
LOC_Os11g01300Os.12962.1.S1_at1/1111+161297..162402Sec61beta family protein, expressed
LOC_Os11g01310OsAffx.18616.1.S1_at11/1111+163588..164406hypothetical protein
LOC_Os11g01320OsAffx.30764.1.S1_at10/1111+173253..179087expressed protein
LOC_Os11g01320OsAffx.30764.2.S1_at3/1111+173253..179087expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6952.1.S1_at--1068--2711Chr11:156247..156271 (25 bp)
AAGCAGAGCCTATCATACCATCCTT
LOC_Os11g01290
OsAffx.6952.1.S1_at--216--831Chr11:156295..156316 (22 bp)
ATGGTTACGGCTACATTAATGCTAC
LOC_Os11g01290
OsAffx.6952.1.S1_at--1093--4831Chr11:156504..156526 (23 bp)
GCTACAAACTACCAAGTCGGCACTG
LOC_Os11g01290
OsAffx.6952.1.S1_at--276--7191Chr11:156517..156541 (25 bp)
GTCGGCACTGGCTGCCTAAGTGACA
LOC_Os11g01290
OsAffx.6952.1.S1_at--314--2871Chr11:156534..156558 (25 bp)
AAGTGACATCTACTTTTGCCTGCGT
LOC_Os11g01290
OsAffx.6952.1.S1_at--42--10531Chr11:156562..156586 (25 bp)
TTCACTCCTGCAAATGCTAGGCTTC
LOC_Os11g01290
OsAffx.6952.1.S1_at--86--7011Chr11:156607..156631 (25 bp)
GTACTGATGGTTTGCGGCCTTATGC
LOC_Os11g01290
OsAffx.6952.1.S1_at--590--5991Chr11:156637..156661 (25 bp)
GAGACGCAGCGATTCATGCAGATGA
LOC_Os11g01290
OsAffx.6952.1.S1_at--1135--5671Chr11:156709..156733 (25 bp)
GACATTACTCATCTCGATGGGCTGA
LOC_Os11g01290
OsAffx.6952.1.S1_at--615--3031Chr11:156757..156781 (25 bp)
AATCGACGCGTAGCTGCTGCTGACC
LOC_Os11g01290
OsAffx.6952.1.S1_at--262--8971Chr11:156863..156887 (25 bp)
TGAAGTACAACCCTTACTACGTTCT
LOC_Os11g01290
Target Sequence 
AAGCAGAGCCTATCATACCATCCTTCCTCAACTCCCACCAAATCAACTATGGTTACGGCTACATTAATGCTACAAACTAC
CAAGTCGGCACTGGCTGCCTAAGTGACATCTACTTTTGCCTGCGTGAGTTCACTCCTGCAAATGCTAGGCTTCAAAGTCA
ACAGAGGAGGAGAGTACTGATGGTTTGCGGCCTTATGCTGTCCGAGACGCAGCGATTCATGCAGATGAAGAGGGAGGTGA
TCGAGAATATCCATTCAAACAATGGTGAACGTCAAGACATTACTCATCTCGATGGGCTGATTCATGATTGGGGTGTTGAG
AGCAATCGACGCGTAGCTGCTGCTGACCATCAACATCAACATGGCGGCGGCGAGGCTCCAGCAGCAGCAGCAGCTCCAGG
CCAGGTAGTGGACTATGGCCTGTGGGTGTTGAAGTACAACCCTTACTACGTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis