Browse Element(s) Details


OsAffx.30763.1.S1_s_at

Description tigr:9639.m00030
TID=OsAffx.30763.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein transport protein subunit, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0130011/11Sec61beta family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01240OsAffx.31535.1.S1_at11/1111+135610..137959IBR domain containing protein
LOC_Os11g01240OsAffx.31535.2.S1_x_at8/1111+135610..137959IBR domain containing protein
LOC_Os11g01250OsAffx.18615.1.S1_x_at11/1111+138893..139318hypothetical protein
LOC_Os11g01250OsAffx.18615.1.S1_at11/1111+138893..139318hypothetical protein
LOC_Os11g01260NANA11+140220..141665expressed protein
LOC_Os11g01270Os.6196.2.S1_at11/1111+143175..148102mitochondrial substrate carrier family protein, putative, expressed
LOC_Os11g01270Os.6196.1.S1_x_at10/1111+143175..148102mitochondrial substrate carrier family protein, putative, expressed
LOC_Os11g01280Os.33915.1.S1_at11/1111+151138..154481expressed protein
LOC_Os11g01290OsAffx.6952.1.S1_at11/1111+155018..157032hypothetical protein
LOC_Os11g01300OsAffx.30763.1.S1_s_at11/1111+161297..162402Sec61beta family protein, expressed
LOC_Os11g01300Os.12962.1.S1_at1/1111+161297..162402Sec61beta family protein, expressed
LOC_Os11g01310OsAffx.18616.1.S1_at11/1111+163588..164406hypothetical protein
LOC_Os11g01320OsAffx.30764.1.S1_at10/1111+173253..179087expressed protein
LOC_Os11g01320OsAffx.30764.2.S1_at3/1111+173253..179087expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015031biological_processprotein transport
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30763.1.S1_s_at--854--8771Chr11:161859..161883 (25 bp)
TGTTTCTTCTTACTACCTTGTTTCA
LOC_Os11g01300
OsAffx.30763.1.S1_s_at--1126--3131Chr11:161817..161841 (25 bp)
AATTAATCACTCCTACTTGGGCTTG
LOC_Os11g01300
OsAffx.30763.1.S1_s_at--886--631Chr11:161732..161756 (25 bp)
ATGCTTCTCGATTCTACTCTTGCTA
LOC_Os11g01300
OsAffx.30763.1.S1_s_at--917--10711Chr11:161713..161737 (25 bp)
TTGCTACCTCATCTATTGCTACTAG
LOC_Os11g01300
OsAffx.30763.1.S1_s_at--1000--7811Chr11:161647..161671 (25 bp)
GGTCTTGCTGTCTACTTTTTAGCTT
LOC_Os11g01300
OsAffx.30763.1.S1_s_at--568--9611Chr11:161607..161631 (25 bp)
TCAGGCTTTGCTCCAGTACTACTAG
LOC_Os11g01300
OsAffx.30763.1.S1_s_at--1132--9891Chr11:161591..161615 (25 bp)
TACTACTAGCGATTGTTTACCTCTT
LOC_Os11g01300
OsAffx.30763.1.S1_s_at--602--911Chr11:161528..161552 (25 bp)
AGGCTGGTGCTCTTTCATCTAGTAA
LOC_Os11g01300
OsAffx.30763.1.S1_s_at--305--7871Chr11:161448..161472 (25 bp)
GGTATTCCTCCTCACATGACTTAAA
LOC_Os11g01300
OsAffx.30763.1.S1_s_at--1144--7291Chr11:161404..161428 (25 bp)
GTGCTCCACGTATTTTTGGTTGACC
LOC_Os11g01300
OsAffx.30763.1.S1_s_at--173--3171Chr11:161328..161352 (25 bp)
AATTGTCTGCACTGTTTTGCCTTAG
LOC_Os11g01300
Target Sequence 
TGTTTCTTCTTACTACCTTGTTTCAAACGAACAATTGTGGCTAATTAATCACTCCTACTTGGGCTTGCAAAATGTGCCTC
TTGGGGATTTTGATTGCTACAGTGTTACTACATCTTTTGTTCTTCAGATGCTTCTCGATTCTACTCTTGCTACCTCATCT
ATTGCTACTAGTACATTACTGCATCTGTATGCTAAATTGCATTATTTAATTGGGTCTTGCTGTCTACTTTTTAGCTTCAT
ATTAATTCTAGCTCAGGCTTTGCTCCAGTACTACTAGCGATTGTTTACCTCTTTTTTAAATGGGTTTTGTGATGATTTAC
AACTTGTAGCTAGGCTGGTGCTCTTTCATCTAGTAACTGCATCCTCGATAATATCATGGTTTAAAACTGCACGTTAAAAC
CAAGCTGACTAGGTATTCCTCCTCACATGACTTAAACCTGAGGTAATAAGGATTTGTGCTCCACGTATTTTTGGTTGACC
ATTCACAATGCTTTGTTTAGGACCTATTCTTAGCTTAATCTGTGATGCAATAATTGTCTGCACTGTTTTGCCTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30763.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis