Browse Element(s) Details


OsAffx.18615.1.S1_at

Description tigr:9639.m00025
TID=OsAffx.18615.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0125011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01190Os.15622.1.S1_at10/1111+108647..115986expressed protein
LOC_Os11g01200Os.11572.1.S1_at5/1111+116181..123018leucine-rich repeat family protein, putative, expressed
LOC_Os11g01210Os.47934.1.S1_x_at4/1111+126373..128004pentatricopeptide, putative
LOC_Os11g01210Os.47934.1.S1_at3/1111+126373..128004pentatricopeptide, putative
LOC_Os11g01220Os.6077.1.S1_at11/1111+128996..133454expressed protein
LOC_Os11g01230NANA11+133791..134081expressed protein
LOC_Os11g01240OsAffx.31535.1.S1_at11/1111+135610..137959IBR domain containing protein
LOC_Os11g01240OsAffx.31535.2.S1_x_at8/1111+135610..137959IBR domain containing protein
LOC_Os11g01250OsAffx.18615.1.S1_x_at11/1111+138893..139318hypothetical protein
LOC_Os11g01250OsAffx.18615.1.S1_at11/1111+138893..139318hypothetical protein
LOC_Os11g01260NANA11+140220..141665expressed protein
LOC_Os11g01270Os.6196.2.S1_at11/1111+143175..148102mitochondrial substrate carrier family protein, putative, expressed
LOC_Os11g01270Os.6196.1.S1_x_at10/1111+143175..148102mitochondrial substrate carrier family protein, putative, expressed
LOC_Os11g01280Os.33915.1.S1_at11/1111+151138..154481expressed protein
LOC_Os11g01290OsAffx.6952.1.S1_at11/1111+155018..157032hypothetical protein
LOC_Os11g01300OsAffx.30763.1.S1_s_at11/1111+161297..162402Sec61beta family protein, expressed
LOC_Os11g01300Os.12962.1.S1_at1/1111+161297..162402Sec61beta family protein, expressed
LOC_Os11g01310OsAffx.18616.1.S1_at11/1111+163588..164406hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18615.1.S1_at--115--7751Chr11:139221..139245 (25 bp)
GGTGTCGTAGCCACCCCACGCAGTG
LOC_Os11g01250
OsAffx.18615.1.S1_at--524--1131Chr11:139200..139224 (25 bp)
AGTGCCGCACTGTCGCAGCTAGTGA
LOC_Os11g01250
OsAffx.18615.1.S1_at--306--4231Chr11:139196..139220 (25 bp)
CCGCACTGTCGCAGCTAGTGAGGAT
LOC_Os11g01250
OsAffx.18615.1.S1_at--1146--1951Chr11:139192..139216 (25 bp)
ACTGTCGCAGCTAGTGAGGATCCAA
LOC_Os11g01250
OsAffx.18615.1.S1_at--174--7231Chr11:139189..139213 (25 bp)
GTCGCAGCTAGTGAGGATCCAACCG
LOC_Os11g01250
OsAffx.18615.1.S1_at--17--5071Chr11:139186..139210 (25 bp)
GCAGCTAGTGAGGATCCAACCGGCG
LOC_Os11g01250
OsAffx.18615.1.S1_at--439--1572Chr11:139184..139208 (25 bp)
AGCTAGTGAGGATCCAACCGGCGGC
LOC_Os11g01250
OsAffx.18615.1.S1_at--294--1112Chr11:139180..139204 (25 bp)
AGTGAGGATCCAACCGGCGGCGGAG
LOC_Os11g01250
OsAffx.18615.1.S1_at--978--3931Chr11:139163..139187 (25 bp)
CGGCGGAGCAGAGGCAACCCAAGTG
LOC_Os11g01250
OsAffx.18615.1.S1_at--205--3431Chr11:139155..139179 (25 bp)
CAGAGGCAACCCAAGTGTGGAGGAA
LOC_Os11g01250
OsAffx.18615.1.S1_at--953--10853Chr02:16702929..16702952 (24 bp)
TTGGCAACCTCCCTCGGGTCATCCG
NONE
Target Sequence 
GGTGTCGTAGCCACCCCACGCAGTGCCGCACTGTCGCAGCTAGTGAGGATCCAACCGGCGGCGGAGCAGAGGCAACCCAA
GTGTGGAGGAAGTGCGTCGCGCTCGCGCCGTCGCAGGCGGCGTGGTGCACAGTGACGCCGAGGGCGAGGCTACGCGGCGC
CGCCGGCCCCAACAACACGGTGGCCTACACGGCGAGCACCGCGCCGCCCTACGGGAGCGCCGGCACGAGCGGCGCAATCT
TGGCAACCTCCCTCGGGTCATCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18615.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis