Browse Element(s) Details


Os.6196.2.S1_at

Description gb:AK101720.1
DB_XREF= gi:32986929
TID=Os.6196.2
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6196 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033061A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033061A09, full insert sequence.
FL= gb:AK101720.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0127011/11mitochondrial substrate carrier family protein, putative, expressed
LOC_Os12g012409/11mitochondrial substrate carrier family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01200Os.11572.1.S1_at5/1111+116181..123018leucine-rich repeat family protein, putative, expressed
LOC_Os11g01210Os.47934.1.S1_x_at4/1111+126373..128004pentatricopeptide, putative
LOC_Os11g01210Os.47934.1.S1_at3/1111+126373..128004pentatricopeptide, putative
LOC_Os11g01220Os.6077.1.S1_at11/1111+128996..133454expressed protein
LOC_Os11g01230NANA11+133791..134081expressed protein
LOC_Os11g01240OsAffx.31535.1.S1_at11/1111+135610..137959IBR domain containing protein
LOC_Os11g01240OsAffx.31535.2.S1_x_at8/1111+135610..137959IBR domain containing protein
LOC_Os11g01250OsAffx.18615.1.S1_x_at11/1111+138893..139318hypothetical protein
LOC_Os11g01250OsAffx.18615.1.S1_at11/1111+138893..139318hypothetical protein
LOC_Os11g01260NANA11+140220..141665expressed protein
LOC_Os11g01270Os.6196.2.S1_at11/1111+143175..148102mitochondrial substrate carrier family protein, putative, expressed
LOC_Os11g01270Os.6196.1.S1_x_at10/1111+143175..148102mitochondrial substrate carrier family protein, putative, expressed
LOC_Os11g01280Os.33915.1.S1_at11/1111+151138..154481expressed protein
LOC_Os11g01290OsAffx.6952.1.S1_at11/1111+155018..157032hypothetical protein
LOC_Os11g01300OsAffx.30763.1.S1_s_at11/1111+161297..162402Sec61beta family protein, expressed
LOC_Os11g01300Os.12962.1.S1_at1/1111+161297..162402Sec61beta family protein, expressed
LOC_Os11g01310OsAffx.18616.1.S1_at11/1111+163588..164406hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005488molecular_functionbinding
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6196.2.S1_at--51--10032Chr12:135514..135538 (25 bp)
TAGAACCATTTTTTGGCATTGCCTT
LOC_Os12g01240
Os.6196.2.S1_at--153--8292Chr12:135500..135524 (25 bp)
GGCATTGCCTTCGTGATACATGTAC
LOC_Os12g01240
Os.6196.2.S1_at--898--9812Chr12:135484..135508 (25 bp)
TACATGTACCAAATGTTAGGTCCTT
LOC_Os12g01240
Os.6196.2.S1_at--462--3352Chr12:135447..135471 (25 bp)
CATCCTCCCCAACAGAGGGAAATTT
LOC_Os12g01240
Os.6196.2.S1_at--41--10772Chr12:135424..135448 (25 bp)
TTGTCGAATTCCCATTACCATAGGC
LOC_Os12g01240
Os.6196.2.S1_at--911--9872Chr12:135367..135391 (25 bp)
TACAGGAGTAGACGTGCTGCCCTTT
LOC_Os12g01240
Os.6196.2.S1_at--101--10332Chr12:135345..135369 (25 bp)
TTTCTTGCACAGTTCACTTCATCTG
LOC_Os12g01240
Os.6196.2.S1_at--1039--3312Chr12:135331..135355 (25 bp)
CACTTCATCTGTTGTTATTTCTTTA
LOC_Os12g01240
Os.6196.2.S1_at--210--312Chr12:135276..135300 (25 bp)
AACCCTCCTCGTGATTAGTTAGCTC
LOC_Os12g01240
Os.6196.2.S1_at--182--6792Chr12:135259..135283 (25 bp)
GTTAGCTCAGTTGTGACAAGTCCAT
NONE
Os.6196.2.S1_at--587--5612Chr12:135246..135269 (24 bp)
GACAAGTCCATGAGTTACACACTGA
NONE
Target Sequence 
TAGAACCATTTTTTGGCATTGCCTTCGTGATACATGTACCAAATGTTAGGTCCTTNTATATCCTTCNCATCCTCCCCAAC
AGAGGGAAATTTGTCGAATTCCCATTACCATAGGCCTTNATTATACCACTGTATAGTAGATGACAGAACTACAGGAGTAG
ACGTGCTGCCCTTTCTTGCACAGTTCACTTCATCTGTTGTTATTTCTTTAGTAATCCAGANCCTTGATGACATGTTNATT
AACCCTCCTCGTGATTAGTTAGCTCAGTTGTGACAAGTCCATGAGTTACACACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6196.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis