Browse Element(s) Details


OsAffx.18616.1.S1_at

Description tigr:9639.m00031
TID=OsAffx.18616.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0131011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01250OsAffx.18615.1.S1_x_at11/1111+138893..139318hypothetical protein
LOC_Os11g01250OsAffx.18615.1.S1_at11/1111+138893..139318hypothetical protein
LOC_Os11g01260NANA11+140220..141665expressed protein
LOC_Os11g01270Os.6196.2.S1_at11/1111+143175..148102mitochondrial substrate carrier family protein, putative, expressed
LOC_Os11g01270Os.6196.1.S1_x_at10/1111+143175..148102mitochondrial substrate carrier family protein, putative, expressed
LOC_Os11g01280Os.33915.1.S1_at11/1111+151138..154481expressed protein
LOC_Os11g01290OsAffx.6952.1.S1_at11/1111+155018..157032hypothetical protein
LOC_Os11g01300OsAffx.30763.1.S1_s_at11/1111+161297..162402Sec61beta family protein, expressed
LOC_Os11g01300Os.12962.1.S1_at1/1111+161297..162402Sec61beta family protein, expressed
LOC_Os11g01310OsAffx.18616.1.S1_at11/1111+163588..164406hypothetical protein
LOC_Os11g01320OsAffx.30764.1.S1_at10/1111+173253..179087expressed protein
LOC_Os11g01320OsAffx.30764.2.S1_at3/1111+173253..179087expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18616.1.S1_at--929--7972Chr11:163640..163664 (25 bp)
GGATCCACACCTCGAGAGGCCTTGT
LOC_Os11g01310
OsAffx.18616.1.S1_at--289--6231Chr11:163655..163679 (25 bp)
GAGGCCTTGTCCTTGATAACGGTGA
LOC_Os11g01310
OsAffx.18616.1.S1_at--215--6311Chr11:163690..163714 (25 bp)
GATGACCACCTCCTGGAACATGACG
LOC_Os11g01310
OsAffx.18616.1.S1_at--261--5491Chr11:163705..163729 (25 bp)
GAACATGACGAGCAGCTCCATGTCC
LOC_Os11g01310
OsAffx.18616.1.S1_at--392--771Chr11:163724..163748 (25 bp)
ATGTCCATTATTTGCTTGGGCACGT
LOC_Os11g01310
OsAffx.18616.1.S1_at--686--10811Chr11:163739..163763 (25 bp)
TTGGGCACGTGTCCCACAAACTACT
LOC_Os11g01310
OsAffx.18616.1.S1_at--967--2191Chr11:163754..163778 (25 bp)
ACAAACTACTTGACACTCTCTTCCT
LOC_Os11g01310
OsAffx.18616.1.S1_at--867--7631Chr11:163816..163840 (25 bp)
GGGACGATGACGGTAGCTCCTTCCA
LOC_Os11g01310
OsAffx.18616.1.S1_at--148--5091Chr11:163884..164313 (25 bp)
GCACCACCCACACGAGAAGGACTTA
LOC_Os11g01310
OsAffx.18616.1.S1_at--675--8951Chr11:164322..164346 (25 bp)
TGAAAAAAGCAATCGCGTCCTCCTT
LOC_Os11g01310
OsAffx.18616.1.S1_at--59--10571Chr11:164345..164369 (25 bp)
TTCTTCGACTGCTTGCAACGTCAAC
LOC_Os11g01310
Target Sequence 
GGATCCACACCTCGAGAGGCCTTGTCCTTGATAACGGTGACCTCGTCGACGATGACCACCTCCTGGAACATGACGAGCAG
CTCCATGTCCATTATTTGCTTGGGCACGTGTCCCACAAACTACTTGACACTCTCTTCCTCTACTCCACCCATGCCACCAC
CACACCACCACCAGCGGGGACGATGACGGTAGCTCCTTCCACGCCCAACGCACCAACGCACCACGGGCGATGGTCGCGCC
AGACGCACCACCCACACGAGAAGGACTTAGAAAGAATTGAAAAAAGCAATCGCGTCCTCCTTCTTCGACTGCTTGCAACG
TCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18616.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis