Browse Element(s) Details


Os.12962.1.S1_at

Description gb:AU222596
DB_XREF= gi:15008208
DB_XREF=AU222596
CLONE=E20653
TID=Os.12962.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.12962 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_200854.1 (A.thaliana) protein transport protein subunit - like (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0126011/11Sec61beta family protein, expressed
LOC_Os11g013001/11Sec61beta family protein, expressed
LOC_Os05g511501/11Sigma-70, region 4 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01220Os.6077.1.S1_at11/1112+127352..132372expressed protein
LOC_Os12g01230OsAffx.31535.2.S1_x_at11/1112+132654..134949expressed protein
LOC_Os12g01230OsAffx.31535.1.S1_at9/1112+132654..134949expressed protein
LOC_Os12g01240Os.6196.1.S1_x_at11/1112+135267..140056mitochondrial substrate carrier family protein, putative, expressed
LOC_Os12g01240Os.6196.2.S1_at9/1112+135267..140056mitochondrial substrate carrier family protein, putative, expressed
LOC_Os12g01250OsAffx.31536.1.S1_at10/1112+147185..152390hypothetical protein
LOC_Os12g01250Os.33915.1.S1_at1/1112+147185..152390hypothetical protein
LOC_Os12g01260Os.12962.1.S1_at11/1112+155438..156023Sec61beta family protein, expressed
LOC_Os12g01270Os.20602.2.S1_x_at10/1112+156852..159032hAT family dimerisation domain containing protein
LOC_Os12g01280OsAffx.19441.1.S1_at11/1112+159989..160258hypothetical protein
LOC_Os12g01290OsAffx.19442.1.S1_at11/1112+165056..168377Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g01300OsAffx.31537.1.S1_at11/1112+173691..174119hypothetical protein
LOC_Os12g01310OsAffx.7453.1.S1_at11/1112+176168..176876hypothetical protein
LOC_Os12g01320OsAffx.15141.3.S1_s_at1/1112+178539..184910retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006352biological_processtranscription initiation
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0015031biological_processprotein transport
GO:0019685biological_processphotosynthesis, dark reaction
GO:0045941biological_processpositive regulation of transcription
GO:0009507cellular_componentchloroplast
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0003899molecular_functionDNA-directed RNA polymerase activity
GO:0008565molecular_functionprotein transporter activity
GO:0016987molecular_functionsigma factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12962.1.S1_at--53--5371Chr12:155579..155603 (25 bp)
GAAGAAAGACAAACCTAAGCTTAGT
LOC_Os12g01260
Os.12962.1.S1_at--777--5531Chr12:155572..155596 (25 bp)
GACAAACCTAAGCTTAGTGGAGTAG
LOC_Os12g01260
Os.12962.1.S1_at--98--2691Chr12:155563..155587 (25 bp)
AAGCTTAGTGGAGTAGTAGGGATAT
LOC_Os12g01260
Os.12962.1.S1_at--543--7951Chr12:155544..155568 (25 bp)
GGATATGGATCTGCTTGCTGAGTTC
LOC_Os12g01260
Os.12962.1.S1_at--389--831Chr12:155540..155564 (25 bp)
ATGGATCTGCTTGCTGAGTTCTTGC
LOC_Os12g01260
Os.12962.1.S1_at--394--471Chr12:155536..155560 (25 bp)
ATCTGCTTGCTGAGTTCTTGCTAGA
LOC_Os12g01260
Os.12962.1.S1_at--102--3851Chr12:155534..155558 (25 bp)
CTGCTTGCTGAGTTCTTGCTAGATC
LOC_Os12g01260
Os.12962.1.S1_at--386--471Chr12:155512..155536 (25 bp)
ATCTGCCAACCAATTGTACCCTACC
LOC_Os12g01260
Os.12962.1.S1_at--986--10332Chr12:155477..155501 (25 bp)
TTTACTCTTGTTTACCTTGTTTCAG
LOC_Os12g01260
Os.12962.1.S1_at--964--1991Chr12:155474..155498 (25 bp)
ACTCTTGTTTACCTTGTTTCAGACG
LOC_Os12g01260
Os.12962.1.S1_at--863--10752Chr05:29261973..29262022 (24 bp)
TTGTTTACCTTGTTTCAGACGAACA
LOC_Os05g51150
Target Sequence 
GAAGAAAGACAAACCTAAGCTTAGTGGAGTAGTAGGGATATGGATCTGCTTGCTGAGTTCTTGCTAGATCTGCCAACCAA
TTGTACCCTACCCTAGTTCAACTTTACTCTTGTTTACCTTGTTTCAGACGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12962.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis