Browse Element(s) Details


OsAffx.7453.1.S1_at

Description tigr:9640.m00031
TID=OsAffx.7453.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0131011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01250OsAffx.31536.1.S1_at10/1112+147185..152390hypothetical protein
LOC_Os12g01250Os.33915.1.S1_at1/1112+147185..152390hypothetical protein
LOC_Os12g01260Os.12962.1.S1_at11/1112+155438..156023Sec61beta family protein, expressed
LOC_Os12g01270Os.20602.2.S1_x_at10/1112+156852..159032hAT family dimerisation domain containing protein
LOC_Os12g01280OsAffx.19441.1.S1_at11/1112+159989..160258hypothetical protein
LOC_Os12g01290OsAffx.19442.1.S1_at11/1112+165056..168377Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g01300OsAffx.31537.1.S1_at11/1112+173691..174119hypothetical protein
LOC_Os12g01310OsAffx.7453.1.S1_at11/1112+176168..176876hypothetical protein
LOC_Os12g01320OsAffx.15141.3.S1_s_at1/1112+178539..184910retrotransposon protein, putative, unclassified
LOC_Os12g01330OsAffx.22699.1.S1_x_at1/1112+185658..188403retrotransposon protein, putative, unclassified
LOC_Os12g01340OsAffx.3761.1.S1_x_at1/1112+189607..192494hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7453.1.S1_at--1102--7391Chr12:176786..176810 (25 bp)
GTGATGCACGTGCTGCCCCTAGCTA
LOC_Os12g01310
OsAffx.7453.1.S1_at--1161--9991Chr12:176767..176791 (25 bp)
TAGCTACCGAATGGCCTTGCTCGGC
LOC_Os12g01310
OsAffx.7453.1.S1_at--247--4911Chr12:176677..176701 (25 bp)
GCTTCGTCACGGCAGTAGCGCCCGA
LOC_Os12g01310
OsAffx.7453.1.S1_at--1052--1171Chr12:176664..176688 (25 bp)
AGTAGCGCCCGAGCAAGCCACGTTG
LOC_Os12g01310
OsAffx.7453.1.S1_at--731--1191Chr12:176621..176645 (25 bp)
AGTAGGCTGCGCGTGCTTCGGACGT
LOC_Os12g01310
OsAffx.7453.1.S1_at--803--8811Chr12:176375..176399 (25 bp)
TGATAGGGATGACAAGGTGACACAC
LOC_Os12g01310
OsAffx.7453.1.S1_at--892--2891Chr12:176362..176386 (25 bp)
AAGGTGACACACGTGCTGCCCCTGG
LOC_Os12g01310
OsAffx.7453.1.S1_at--924--6211Chr12:176331..176355 (25 bp)
GATGGCCTTGCTTGGCGGCATCCAT
LOC_Os12g01310
OsAffx.7453.1.S1_at--65--4891Chr12:176250..176274 (25 bp)
GCTTCGTCACGGTGGTTGCACCCGA
LOC_Os12g01310
OsAffx.7453.1.S1_at--528--7091Chr12:176245..176269 (25 bp)
GTCACGGTGGTTGCACCCGAGCAAG
LOC_Os12g01310
OsAffx.7453.1.S1_at--675--1731Chr12:176204..176228 (25 bp)
ACCATCGCCGAGTAGGTCGCGCGTG
LOC_Os12g01310
Target Sequence 
GTGATGCACGTGCTGCCCCTAGCTACCGAATGGCCTTGCTCGGCGGCGTCCATGGCCTTGCTCGGTGGCTCGTTCGCCGC
CGGCGTCGCCCGAGCAAGCCACTTCAGCGGCTTCGTCACGGCAGTAGCGCCCGAGCAAGCCACGTTGCCTCCTCCACCGT
CGCCGAGTAGGCTGCGCGTGCTTCGGACGTCGCCGAGGCTGAGGCTTCGCTGCACCTCCTCCAGCACGGCGCGGCCGCCG
GTCCACGACAGCGCGGTGGCGCAGATGGAGTCCCCCGAGGGGGTCGACGTCACGTCTGCGGTGTCCGATGAGGTTGATAG
GGATGACAAGGTGACACACGTGCTGCCCCTGGCCGCCGGATGGCCTTGCTTGGCGGCATCCATGGCCTTGCTCGGTGGCT
CGTTCACCGCCGGCGTCGCCCGAGCTAGCCACTCCAGCGGCTTCGTCACGGTGGTTGCACCCGAGCAAGCCACGCTGCCT
CCTCCACCATCGCCGAGTAGGTCGCGCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7453.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis