Browse Element(s) Details


OsAffx.31536.1.S1_at

Description tigr:9640.m00025
TID=OsAffx.31536.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0125010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01210Os.47934.1.S1_x_at11/1112+124923..127272pentatricopeptide, putative, expressed
LOC_Os12g01210Os.47934.1.S1_at11/1112+124923..127272pentatricopeptide, putative, expressed
LOC_Os12g01220Os.6077.1.S1_at11/1112+127352..132372expressed protein
LOC_Os12g01230OsAffx.31535.2.S1_x_at11/1112+132654..134949expressed protein
LOC_Os12g01230OsAffx.31535.1.S1_at9/1112+132654..134949expressed protein
LOC_Os12g01240Os.6196.1.S1_x_at11/1112+135267..140056mitochondrial substrate carrier family protein, putative, expressed
LOC_Os12g01240Os.6196.2.S1_at9/1112+135267..140056mitochondrial substrate carrier family protein, putative, expressed
LOC_Os12g01250OsAffx.31536.1.S1_at10/1112+147185..152390hypothetical protein
LOC_Os12g01250Os.33915.1.S1_at1/1112+147185..152390hypothetical protein
LOC_Os12g01260Os.12962.1.S1_at11/1112+155438..156023Sec61beta family protein, expressed
LOC_Os12g01270Os.20602.2.S1_x_at10/1112+156852..159032hAT family dimerisation domain containing protein
LOC_Os12g01280OsAffx.19441.1.S1_at11/1112+159989..160258hypothetical protein
LOC_Os12g01290OsAffx.19442.1.S1_at11/1112+165056..168377Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g01300OsAffx.31537.1.S1_at11/1112+173691..174119hypothetical protein
LOC_Os12g01310OsAffx.7453.1.S1_at11/1112+176168..176876hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31536.1.S1_at--599--4231Chr12:147357..147381 (25 bp)
CCGAGCTGATAACGGCGCGAGACTT
LOC_Os12g01250
OsAffx.31536.1.S1_at--234--6511Chr12:149948..149972 (25 bp)
GATATGCTTGCTGTGGTGATACCTT
LOC_Os12g01250
OsAffx.31536.1.S1_at--325--4731Chr12:149957..149981 (25 bp)
GCTGTGGTGATACCTTGCAGATCTT
LOC_Os12g01250
OsAffx.31536.1.S1_at--380--2311Chr12:150068..150092 (25 bp)
AAAGGCGCAACCTTCTTTTCAGGTG
LOC_Os12g01250
OsAffx.31536.1.S1_at--929--5151Chr12:150074..150098 (25 bp)
GCAACCTTCTTTTCAGGTGCACAAG
LOC_Os12g01250
OsAffx.31536.1.S1_at--722--2811NONE
AAGTTGAACTAAAGGCCTGCAGGCT
NONE
OsAffx.31536.1.S1_at--578--3491Chr12:152210..152234 (25 bp)
CAGGCTGCAGCTAATCCAATCCCGA
LOC_Os12g01250
OsAffx.31536.1.S1_at--1076--5371Chr12:152239..152263 (25 bp)
GAAGCAACCGGTTCAATTCATTAAC
LOC_Os12g01250
OsAffx.31536.1.S1_at--954--2451Chr12:152308..152332 (25 bp)
AACAAGATATTTTCCCCACAAGCAT
LOC_Os12g01250
OsAffx.31536.1.S1_at--1142--10651Chr12:152319..152343 (25 bp)
TTCCCCACAAGCATCTGGGACTGGA
LOC_Os12g01250
OsAffx.31536.1.S1_at--850--8111Chr12:152336..152360 (25 bp)
GGACTGGAAGGGACATGACATGCCC
LOC_Os12g01250
Target Sequence 
CCGAGCTGATAACGGCGCGAGACTTCCGTGTCAGCTGGGAACATCGCTTTACCCCTCGCTATTCCTTCAACGACACCACA
ACCGTATGTCCCATGCGCTATACGGAGGGACCTATCCCAAGATATGCTTGCTGTGGTGATACCTTGCAGATCTTCTCTCT
CCAAGTGAAAGAAGCAAAAGGTGGTCTTGACTGGCCGCTGCATGTGTATGGCTTGGTTGCCACCAGGGACTCTGTAGATC
AAAGGCGCAACCTTCTTTTCAGGTGCACAAGGGATAATTGTCAAATTCTCACTCCACAGGATTCACACCTGCTGTTAACA
GGCCCATCTCGTGCAGTTGTGGTAATTGATCCAGTAACGTTTGAAGTTGAACTAAAGGCCTGCAGGCTGCAGCTAATCCA
ATCCCGACCAAGAAGCAACCGGTTCAATTCATTAACACCAATTAACATATGGATGGATGCAATCAGCAAGATGCAAAATG
AACAAGATATTTTCCCCACAAGCATCTGGGACTGGAAGGGACATGACATGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31536.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis