Browse Element(s) Details


Os.6077.1.S1_at

Description gb:AK119290.1
DB_XREF= gi:37988913
TID=Os.6077.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.6077 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-130-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-D06, full insert sequence.
FL= gb:AK119290.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0122011/11expressed protein
LOC_Os12g0122011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g01180Os.50258.2.S1_a_at11/1111+106236..107210Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os11g01190Os.15622.1.S1_at10/1111+108647..115986expressed protein
LOC_Os11g01200Os.11572.1.S1_at5/1111+116181..123018leucine-rich repeat family protein, putative, expressed
LOC_Os11g01210Os.47934.1.S1_x_at4/1111+126373..128004pentatricopeptide, putative
LOC_Os11g01210Os.47934.1.S1_at3/1111+126373..128004pentatricopeptide, putative
LOC_Os11g01220Os.6077.1.S1_at11/1111+128996..133454expressed protein
LOC_Os11g01230NANA11+133791..134081expressed protein
LOC_Os11g01240OsAffx.31535.1.S1_at11/1111+135610..137959IBR domain containing protein
LOC_Os11g01240OsAffx.31535.2.S1_x_at8/1111+135610..137959IBR domain containing protein
LOC_Os11g01250OsAffx.18615.1.S1_x_at11/1111+138893..139318hypothetical protein
LOC_Os11g01250OsAffx.18615.1.S1_at11/1111+138893..139318hypothetical protein
LOC_Os11g01260NANA11+140220..141665expressed protein
LOC_Os11g01270Os.6196.2.S1_at11/1111+143175..148102mitochondrial substrate carrier family protein, putative, expressed
LOC_Os11g01270Os.6196.1.S1_x_at10/1111+143175..148102mitochondrial substrate carrier family protein, putative, expressed
LOC_Os11g01280Os.33915.1.S1_at11/1111+151138..154481expressed protein
LOC_Os11g01290OsAffx.6952.1.S1_at11/1111+155018..157032hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6077.1.S1_at--25--6632Chr12:128494..128518 (25 bp)
GTTGTCGTCTTCAGAGGGTGCATCA
LOC_Os12g01220
Os.6077.1.S1_at--225--1912Chr12:127958..127982 (25 bp)
ACGGGCGCTGTGCAAAATTCTCCTA
LOC_Os12g01220
Os.6077.1.S1_at--916--2352Chr12:127928..127952 (25 bp)
AAAGCTGCTCCAGAACCTAGTCCAT
LOC_Os12g01220
Os.6077.1.S1_at--59--10012Chr12:127683..127935 (25 bp)
TAGTCCATGGTCACCGGTTAAACGG
LOC_Os12g01220
Os.6077.1.S1_at--795--7552Chr12:127643..127667 (25 bp)
GGGCCATTCGACTGTACCAAGTATT
LOC_Os12g01220
Os.6077.1.S1_at--69--2852Chr12:127602..127626 (25 bp)
AAGTGACTGATGATACCCCTTGACA
LOC_Os12g01220
Os.6077.1.S1_at--808--2272Chr12:127571..127595 (25 bp)
AAATCGTTGGCCTTGGACTTGTCTT
LOC_Os12g01220
Os.6077.1.S1_at--1038--2812Chr12:127511..127535 (25 bp)
AAGTTGGTCCTGTTGTTCCATGTAA
LOC_Os12g01220
Os.6077.1.S1_at--335--3172Chr12:127488..127512 (25 bp)
AATTGGCTAACCTTGTACATGAGAC
LOC_Os12g01220
Os.6077.1.S1_at--871--692Chr12:127470..127494 (25 bp)
ATGAGACATTCACAAGCCTTGCCAC
LOC_Os12g01220
Os.6077.1.S1_at--186--7252Chr12:127379..127403 (25 bp)
GTCCCAGGCAAACGCTTGGCTAACA
LOC_Os12g01220
Target Sequence 
GTTGTCGTCTTCAGAGGGTGCATCAAGTATAGAGAGGATTAAGTCAGTGGGTAAATCAAGAACAAATACCATAAGTAAAG
ATCATCTAAAAAACTTGGTACCGTTTACAGAAGAATGGCTTGCTGTCATGGAAGCTTTTGGAGAGGAAGTTTTGGAACAG
AAGACGGGCGCTGTGCAAAATTCTCCTACCGANAAAGCTGCTCCAGAACCTAGTCCATGGTCACCGGTTAAACGGAAAGC
TCAAGATGTTGGGCCATTCGACTGTACCAAGTATTCCAAGAACGTCAGAACAAGTGACTGATGATACCCCTTGACAGCAA
TCAAATCGTTGGCCTTGGACTTGTCTTGAGGTCANAGCACAACACGAAGCCTTGCTNGCAACAAGTTGGTCCTGTTGTTC
CATGTAATTGGCTAACCTTGTACATGAGACATTCACAAGCCTTGCCACTGCGCTTNCTTGCGCTCATTTTGTTNTNATTT
GGTTGCCAAATTTGTAGAACATNGTNCGGACCACGTCCCAGGCAAACGCTTGGCTAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6077.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis